1. Home
  2. Mutant Lines
  3. ET13757

ET13757

CSHL Arabidopsis genetrap mutant lines

Original: ET13757

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13757

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22390904 [Map]; Strand: w
      • AT5G55180.2 - [+] show detail - O-Glycosyl hydrolases family 17 protein
        Distance: 190; Region: intergenic
      • AT5G55190.1 - [+] show detail - RAN GTPase 3
        Distance: -1272; Region: intergenic
    Flanking Genome Sequence: ET13757 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACTCTGGA GTATTGGAAT 
    GAAACAATAT GGACAATATA TACTGTTGAG TTTTGCTTGG ATCATGATCA 
    GTTGATCACC ATCAAAACGA ATCAATTTGA GATTTTGAAA ATAATATTGC 
    AATGTTGTTT ATTGGATCAG TTGCAGGATA TATGGTTTAT ATCAACAAAG 
    TTTTGTCAGT TTTATAAACT CACGAGCAAA GAAGTCAAGG CTTAAGGGGG 
    AAAGAAAATC TGACTATTTA TCCGATGAAA CCAACCAAAT ATACAATAAT 
    AAAATTAAAT ATACGCAAAT CATATACTCG AATGACAAAA GAACAATGTA 
    TCAAAATAAA TAACGTAAAT AAATCCGCAC GATCCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22391047 [Map]; Strand: w
      • AT5G55180.2 - [+] show detail - O-Glycosyl hydrolases family 17 protein
        Distance: 333; Region: intergenic
      • AT5G55190.1 - [+] show detail - RAN GTPase 3
        Distance: -1129; Region: intergenic
    Flanking Genome Sequence: ET13757 - 5-prime edge 
    TTGAGCTACG ACACACTACC AACTCCCATA TAGAAGCCTG TAACTCGAAA 
    AATGGGTTTT GAGTTATAGT TTGTCACAAA GCTCTGTGAA TACATTATAC 
    TACATGAAAA CTCATCAAGT CTTTTGATAT GGAATCTTCA GAACCAAGAA 
    TAGCTTTAAT GCTTTTATAG TTGTGAAGTC TGTTATTATT CTATTACTGA 
    ATGTGTATTC TCCTCCAGAA ATATCTAAGA TCTTAGATGA GTCAGTTTAG 
    ACGTTTTAAA CAGCAAGAAT GTTCTACTTT TTTATGTCAT TTTAAAAAGC 
    TTAAGGTTTT GGATTGTAAG CATCGTGTGG TTGCTAGAAC TTCCTTCCCT 
    TTGCATTATT GAGATAGTGT ACTCGCAAAA CACGGTGGCA ATTTAACCAA 
    AACATAGTAC AAACACGGTT TCAAAATTTT AAAAACAAAA CCATATACAG 
    TACTTGATTA CCATCCCA

AT5G55180.2

Model type
Protein coding
Short Description
O-Glycosyl hydrolases family 17 protein
Computational Description
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G26830.1); Has 563 Blast hits to 555 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 554; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G55190.1

Model type
Protein coding
Short Description
RAN GTPase 3
Curator Summary
A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.
Computational Description
RAN GTPase 3 (RAN3); FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: protein import into nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: RAS-related nuclear protein-1 (TAIR:AT5G20010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR