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ET13866

CSHL Arabidopsis genetrap mutant lines

Original: ET13866

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13866

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 2257929 [Map]; Strand: c
      • AT2G05900.1 - [+] show detail - SET domain protein 11
        Distance: 21; Region: intergenic
      • AT2G05910.1 - [+] show detail - Protein of unknown function (DUF567)
        Distance: 364; Region: intergenic
    Flanking Genome Sequence: ET13866 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTAT AGTTAAACGG 
    TAGTGTTTGT TAGAATTTTT CGCTTGCTCT ATAATCTTGT AGTCCATTCG 
    TTTTATAAAT AAACTCAGTT TAAATAAATT GATTAGTCTC TATGGTCATT 
    AATTAATTTC GTAAAATCAA CAATAAAAAA ATCACTAGTT CAAAAACATA 
    ACCACTACGG TTCACTTAAT ATAGAAATGA ATTGATTACT GTTTAACTTT 
    CTATTGAAGT CTATTAGTGT GTAGAGGAAT AGATAAGTTA GTTATTTTGT 
    TGCAAATTTT TCTCATCTTA ATGCTCATTT TAAATTTCAT GCTTCTCGTG 
    TTTGATTAGG TCTAATCATT TTCAAAGAGA AATTCTATCA TT

AT2G05900.1

Model type
Protein coding
Short Description
SET domain protein 11
Curator Summary
Predicted to encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.
Computational Description
SET domain protein 11 (SDG11); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET domain (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 3 (TAIR:AT1G73100.1); Has 2906 Blast hits to 2667 proteins in 280 species: Archae - 0; Bacteria - 89; Metazoa - 1281; Fungi - 322; Plants - 960; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G05910.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF567)
Computational Description
Protein of unknown function (DUF567); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF567) (TAIR:AT5G20640.1); Has 302 Blast hits to 301 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR