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ET13870

CSHL Arabidopsis genetrap mutant lines

Original: ET13870

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13870

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15540160 [Map]; Strand: c
      • AT2G36990.1 - [+] show detail - RNApolymerase sigma-subunit F
        Distance: -21; Region: promoter
      • AT2G37000.1 - [+] show detail - TCP family transcription factor
        Distance: -139; Region: promoter
    Flanking Genome Sequence: ET13870 - 3-prime edge 
    ACGTTACCGA CCGTTTTCAT CCCTATACAC ACACTCCCAA TTTTTTTTTT 
    CTAAAAATTA AAACTTGTTT GTTGCCATGG AAGTCAAATT TTGTTCTCTC 
    TCCCTTTTTT TTTTCCCAAA AAAGGGAATA AGGTGGGGCT TTATTTGGGG 
    TTAAAAGCCC CAATTTTTCC AAAAGTAATT TGAAATCTTT TTTTTTTC

AT2G36990.1

Model type
Protein coding
Short Description
RNApolymerase sigma-subunit F
Curator Summary
Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons. It is a substrate for regulatory phosphorylation by cpCK2, a nuclear-coded plastid-targeted casein kinase 2, that has been implicated as a key component in plant sigma factor phosphorylation and transcriptional regulation.
Computational Description
RNApolymerase sigma-subunit F (SIGF); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 (TAIR:AT1G08540.1); Has 23918 Blast hits to 23899 proteins in 2801 species: Archae - 0; Bacteria - 17084; Metazoa - 1; Fungi - 2; Plants - 241; Viruses - 15; Other Eukaryotes - 6575 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G37000.1

Model type
Protein coding
Short Description
TCP family transcription factor
Computational Description
TCP family transcription factor ; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT1G58100.1); Has 346 Blast hits to 346 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 346; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR