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ET13878

CSHL Arabidopsis genetrap mutant lines

Original: ET13878

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13878

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2365559 [Map]; Strand: c
      • AT3G07390.1 - [+] show detail - auxin-responsive family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13878 - 3-prime edge
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTTGCT 
    TGTTTCGTCT CGCTAATCTC ACCGGCGATT TCACAACAGG CTTGCAAATC
    ACAGAACTTG AACTCCGCCG GTCCGTTCGA TAGTTGCGAA GACCTTCCGG
    TACTCAATTC CTACCTCCAT TACACCTACA ATTCCTCAAA TTCATCTCAC
    TCGAC

AT3G07390.1

Model type
Protein coding
Short Description
auxin-responsive family protein
Curator Summary
isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.
Computational Description
Auxin-Induced in Root cultures 12 (AIR12); FUNCTIONS IN: extracellular matrix structural constituent; INVOLVED IN: response to auxin stimulus, lateral root morphogenesis, extracellular matrix organization; LOCATED IN: extracellular region, anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT3G25290.2); Has 254 Blast hits to 254 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 248; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR