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ET13900

CSHL Arabidopsis genetrap mutant lines

Original: ET13900

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13900

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 256304 [Map]; Strand: w
      • AT5G01680.1 - [+] show detail - cation/H+ exchanger 26
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET13900 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTATATAT 
    ATGAAACAGG CTGGGATATT CTTAGGACCC TCGGCTTTGG GACAAAACAT 
    TGATTTAGTA AAAAAATTAT TCAACACAAG AAGCTATTTC ATAATAGAAT 
    CATTTGAGGC AATATCCTTC AT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 256394 [Map]; Strand: w
      • AT5G01680.1 - [+] show detail - cation/H+ exchanger 26
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET13900 - 5-prime edge 
    TCACACTTCT ATAGTTTAAA CCTTTTTTTC TTTGCGGGAA ATATAGAGAG 
    ATTCAAAATT TATTAAAAAA AACGTAGAAT GGTATGAAAA AGTGATTACA 
    TACCAGAATT TGAGTGACGA AGTCGACATT TGCGAGAGGG CGGAGAAGAG 
    CTTGGAAGAC GGAAGAGAGA GATGAGACGA GAGAAATGAG AAGAAGAAGA 
    AGAGGAGTCG AATACTTCAA TGGATCATCT CCTCTAAGTA ATCCGCCAGA 
    GCTTGATCCC AACCATGCCT CGCATACAAA TTCATGTGTG CCATTATTTG 
    TAACACTATT GTTCATCTTG TTTCTCTTTG GGAATATTTT TTCTTCTTAA 
    AACTAGTATT CACGTTCTTC TTTATAACCA TTTTTGTTTG TGTTTTTGAA 
    TTCAGCATAA CGCTAACTAA TTGAGCAAAC AGATCAAGCT TGTTGAGCTG 
    GGGAAGAAGA TACATGTATC TTTTTTAAGA TTTTAAACAG GTTTTGTTGT 
    TTTTCAAGGA TTTTGT

AT5G01680.1

Model type
Protein coding
Short Description
cation/H+ exchanger 26
Curator Summary
member of Putative Na+/H+ antiporter family
Computational Description
cation/H+ exchanger 26 (CHX26); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, leaf, pollen tube; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 27 (TAIR:AT5G01690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR