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ET13901

CSHL Arabidopsis genetrap mutant lines

Original: ET13901

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13901

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET13901 - 3-prime edge 
    ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTATTTCC GGAATTGTGT 
    CGAGGAGAGA TGGAGAGATT GTGCCATAGA TCCACATCTT AACGATGCCG 
    TCACGTTCTT TCCATGTCAT GTCGGCGGCG TTTGCTGGTG TGGACGTGCC 
    GTCGAGATGT CCGAAGACTC CAAAACTGTA GCAGTGAGTT TCAAATAACT 
    CACGCCATGC GTCGAATTTC ATCTTGTGCA TGTCGAGAAC AAGAGGAATG 
    TGTGACTTGA TGTGAGTCAC AGTGAAAACT TTGTCGATTG CTTGACCCAT 
    GGTTGAGTAG AGGAACAGAG GAAGAAACGA AGAAACAGAT GGTTTGTGAA 
    AGAAGAAGAA AGAATTTTGA GAGTGGCGGC TGCTGAGAAT TTTACGTTTT 
    AGAGAGAAGG CTCTGATACC ATGTTACT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1975650 [Map]; Strand: w
      • AT4G04120.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13901 - 5-prime edge 
    TCATCCTACT TTCTCCCTGT CTGGAACCCG TAGCACCACT CGTGAGATTT 
    GGGCCTCCAT TGAAAACCTT TTCAGAGATA ACAAAGAGGC ACGGGCAATT 
    CAACTCGACA ACGACTTACG CTCTCTCACC CTTGGCGACC TGTCTGTGCA 
    TGATTATTGC CAGAAGCTCA AGACACTCTC CGATCTCCTC GCCAACGTTG 
    ACTCTCCTGT CTCTGATCGT GTCGTCGTTA CGCATATACT CAATGGACTT 
    TCTGAAAAGT TTGACAACAT CATCAACATC ATCAAGCATC GCCAACCGTT 
    CCCATCTTTC TCTGTTGCCC GATCCATGCT CATTGAGGAA GAACGTCGTC 
    TCTCCAAGCA GGTCAAAACA GGATCCTCTC ACTCAGCCAA CTCATCGTCT 
    CCCAATGTGC TCTATGTAAC GTCTAATGGA AATCAAAACT CCATGTCTCG 
    CGACAACAAT CACAACACTT ATCGTGACAA CAACAACACC GGCTACCGCG 
    ACAACAACCA CAACAACTAC AATGGGCACA ACAACAATGG TAGAGGTCGT 
    GGACGTGGAC GTTGCGGTAC CGGCAGTAAC GGCAGTAACG GCAGAGGTCG 
    TGGACGCCAA AACTGGCAAT GGAATCCTCG CAATTGGCAG ACACAACAAC 
    CATGGCTCTC AACACCAACC CCATATCCAC ACTGGCCACA ACAAAACTGG 
    ATGCAAAGAC CACCGATGGC

AT4G04120.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 3.8e-19 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR