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ET13988

CSHL Arabidopsis genetrap mutant lines

Original: ET13988

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13988

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30345264 [Map]; Strand: c
      • AT1G80740.1 - [+] show detail - chromomethylase 1
        Distance: 0; Region: intron11 (CDS)
    Flanking Genome Sequence: ET13988 - 5-prime edge 
    GTTCATGTGT TGGGAGGGGA TAAGGGGGAA GTTTCTGTCA AACAAATCAA 
    GAGAGAGCAA TAAAGATCAT GTTCCTCAAA AGACAATATA TTAGTGGTAA 
    ATATTCTGTA ACATATATTT ACCTCTGATG GTTGTGCAGC CCATAAAAAA 
    ACCCTGTTTC TAAGCTGAGG GAGCCCGTAA GATCCAGCAG CCATCATTCC 
    CAACCGCGTC TGGTAATTCA TCTCACCCAA CCAAGCTACA GCATGACGTG 
    CCAGGAAACC CTTTGAAAAC CTAAGAAGGT CTACAACATT TTCCATCAGC 
    ACATAGTTTG GCTTGAGGAA GTCAATGATG TCTAAAAACA CCAAAAGTTG 
    CTGGTTCTTC TGATCTTCAA GCGGTGCTTC ATTGTTTCTA TACCGGTTAT 
    ACCCACTGAT CCCTTGGCAA GGGGGCCCAC CGCACACTGT GTAGACAGTA 
    CCCTGAAAAA TCATCAAACA TTTAGTTAAG ATTGTAAATA GCTTTATATT 
    AAAAAGATCA TATAAAGCAA AGATATTATC TTACCGGAAG TGGTAAGAGA 
    TGAGACTTAA ACCCATCTAT CACGTACTCC TTCAGCTTCT CCTTGCAGT

AT1G80740.1

Model type
Protein coding
Short Description
chromomethylase 1
Curator Summary
ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.
Computational Description
chromomethylase 1 (CMT1); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: DNA mediated transformation, DNA methylation; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Chromo domain subgroup (InterPro:IPR017984), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 3 (TAIR:AT1G69770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR