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ET14040

CSHL Arabidopsis genetrap mutant lines

Original: ET14040

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14040

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1363540 [Map]; Strand: w
      • AT2G04090.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: ET14040 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATTAAAT ACATATAGGT 
    CTAGTGAGTA AATGTTGATT AATAAAATTA GATATAGCTT GTCTTTACTG 
    ATGCAATCTT TTTGGTTGTT GTTGTTGTTG TTGTTGTTGT TTTGTTGATG 
    ATAGTCTTAC AACATCATCT CTCCACTGCG TCATTCCAAT GGGTATCGGG 
    GCTGCTGGAA GGTATGATTC CGAGAAAACC GACTAAATAT TTGTTTGGGA 
    ATTTTCAGAC TAGTCACAAT GTTTACTTTG GCAGCACACG GATTTCAAAC 
    GAATTGGGAG CGGGAAATCC GGAGGTTGCT AGGCTGGCAG TGTTTGCCGG 
    TATATTCCTT TGGTTCCTAG AGGCTACCAT TTGTATCACA CTTCTGTTCA 
    CTTGCAAAAA TATTTTTGGC TACGCGTTCA GCAATAGCAA AGAAGTTGTG 
    GACTATGTCA CGGAGCTATC TTCGCTGCTT TGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16321463 [Map]; Strand: w
      • AT3G44770.2 - [+] show detail - Protein of unknown function (DUF626)
        Distance: 3152; Region: intergenic
      • AT3G44780.1 - [+] show detail - Cysteine proteinases superfamily protein
        Distance: 138; Region: intergenic
    Flanking Genome Sequence: ET14040 - 5-prime edge 
    ATTTGTTTCA CTGCCGTATA TTAAGAACAA TGAACCAACT TGTGATTATT 
    TTGATATGTA CAAAATTTGA CCTTTCATTA ATATTTGCTA TTTGTTAAAC 
    TATGTTTTTC ATTTTTTCAT TAATATTTGC TATTTGTTCT ACTATGTTTT 
    TCATCTCACT CGACC

AT2G04090.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04100.1); Has 9714 Blast hits to 9643 proteins in 1968 species: Archae - 172; Bacteria - 6792; Metazoa - 143; Fungi - 326; Plants - 1316; Viruses - 0; Other Eukaryotes - 965 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G44770.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF626)
Computational Description
Protein of unknown function (DUF626); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT4G29550.1); Has 177 Blast hits to 176 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G44780.1

Model type
Protein coding
Short Description
Cysteine proteinases superfamily protein
Computational Description
Cysteine proteinases superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19515.2); Has 19 Blast hits to 19 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR