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ET14104

CSHL Arabidopsis genetrap mutant lines

Original: ET14104

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET14104

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27434215 [Map]; Strand: c
      • AT1G72900.1 - [+] show detail - Toll-Interleukin-Resistance (TIR) domain-containing protein
        Distance: 433; Region: intergenic
      • AT1G72910.1 - [+] show detail - Toll-Interleukin-Resistance (TIR) domain-containing protein
        Distance: -1399; Region: intergenic
    Flanking Genome Sequence: ET14104 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACTA 
    AGAACATCCA CAATGGTTGA CTCTTAGCAA ACAAACAATA AAAAATTTAT 
    ATGATTTAAA TATTAGATGA GTAAACTTAA GCCAATTGTC TCTTAGTTAA 
    GAAACAATTG GTCTAGATTT CACCAAATTT AAGAAACCTA TAATTAAAAA 
    ATATTATTTA TCTATATTTA CACTTTAGTT TTGTTTAAGA GACTTAGGCT 
    TAGAAACCTC CATTGAGGAT ACTCTAGAGA AGCTGGAGTT AGGAGAAACT 
    TCTCTAAATC TACTAAAGAA GATACTAGTG TAAGGAGATA ATGCTTAGAA 
    TGCAGTCAAA TATTTTGCAT CAACTGTAAA GTTACATGGC ATAGTAACTT 
    GTCGTGCGAC GATTACAGGA GATTGGGTCC AAATGCTACA GCTGATGATA 
    TAACGCTTAA AGCTTTAGCA AATAAAAAAA TGTGGCATCA ATGTGAAAAG 
    TGCAACTACA TGATCGAACT TTCTAAAGGA TGCATCAAAG TAACTTGCAT 
    GTATATCATC AAAGCAACAT TAAATGGAAG TTCCATACCC ATATTAGCAT 
    CTCTATTTAT CTCTATTAAT AACATTCAAA GCAACAATAG TTATATATGT 
    TTATCATTGC ATTTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16706883 [Map]; Strand: w
      • AT3G45540.1 - [+] show detail - RING/U-box protein with C6HC-type zinc finger
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET14104 - 5-prime edge 
    CTTTCTCCCT GGTTCTTAGT ATATTTAGAG AGCTCGTTTA CCGACATTAA 
    GGCCGAACAC CTCGGGTTTG GGCATTAAAT TATTTTCTTT ATGGGAATCG 
    AATCCTCTTT GATCCTTTGT TGCCATATCT TTATTTGTTT AGGTGACAAA 
    AGATTAACAC AGCTTCCAAA AGTCAGCTTA GACTTGCAGT GGTAACGAGG 
    ACATCTAATC ACACTTCCCT AGAGTAGCCT CACCTCTATA TGTTGTTTCA 
    TACACTCGGA ACAAAAATGA TGACGACACT TATCAACACA AAACATCTGA 
    TTAGCACTAA TATCATCATC TAAACAGATA CTGCAAGTCC TTTTGCGGGT 
    AGCCTTGGCT TGGCGAGTAC GATTCACAAG CCTGCTAATT TCAGAAACTA 
    TTGCTTCCCT TGCTAGCTTA TAAGCATCTC TGATACTATT TCAGATCCCA 
    AAAGCCGGAA AGATCGACGC CAATTGTTTT TGTATACATG GCATATTATT 
    CGCAAAGATC AGGAATCAGC GAGCAACAGT GGTAACGAAT TCAAGGAAAA 
    GGTTTGAGAA GAAGGTTCTC TTAACTTTTT ATAAATGTGA ACTAAAAAAG 
    CCAGAGCATG CGAGTCTCTT TGAAATAGAG ATCGAACTGT ACGAAAAAGA 
    TAAGAGAGTT AATGA

AT1G72900.1

Model type
Protein coding
Short Description
Toll-Interleukin-Resistance (TIR) domain-containing protein
Computational Description
Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT1G72940.1); Has 4486 Blast hits to 4351 proteins in 152 species: Archae - 0; Bacteria - 27; Metazoa - 4; Fungi - 0; Plants - 4454; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G72910.1

Model type
Protein coding
Short Description
Toll-Interleukin-Resistance (TIR) domain-containing protein
Computational Description
Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT1G72900.1); Has 4443 Blast hits to 4310 proteins in 184 species: Archae - 0; Bacteria - 120; Metazoa - 0; Fungi - 0; Plants - 4322; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G45540.1

Model type
Protein coding
Short Description
RING/U-box protein with C6HC-type zinc finger
Computational Description
RING/U-box protein with C6HC-type zinc finger; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1); Has 2900 Blast hits to 2879 proteins in 213 species: Archae - 0; Bacteria - 2; Metazoa - 1213; Fungi - 549; Plants - 696; Viruses - 0; Other Eukaryotes - 440 (source: NCBI BLink).
Link
InterPro Scan - TAIR