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ET14147

CSHL Arabidopsis genetrap mutant lines

Original: ET14147

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14147

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 32962 [Map]; Strand: c
      • AT4G00080.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G00085.1 - [+] show detail - pre-tRNA
        Distance: -838; Region: promoter
    Flanking Genome Sequence: ET14147 - 3-prime edge 
    CCCTACATAT CCTCTCAGTT AATTCTCTAA TTCGCCATGG CGGCTAACAA 
    CAAATTGTTC TTTGTATTAC TCTCCCTGTT CCCTCTCATC ATCTTCTCGG 
    CAACCGCCAC GTCATCAAAA GACTACGACA CGAAGGCTTA CGTGCACTCA 
    TGGTGCCCAA CAACCTTATA CCCGAAACTA TGCGTCCGGT CGATGTCTCG 
    TTACGTGCGT TCACGCGCGG GGCAAAATCC ACGGGATCTG GCCCGATTTG 
    CGCTCAAAGC CAGCCTATAT AGAGCTAAGT ACACAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 32870 [Map]; Strand: c
      • AT4G00080.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: -23; Region: promoter
      • AT4G00085.1 - [+] show detail - pre-tRNA
        Distance: -930; Region: promoter
    Flanking Genome Sequence: ET14147 - 5-prime edge 
    TCCATCCTAC TTTCTCCCTG AGGAATGTAG CTTAATCGGT GGATGGTATA 
    ATATTTACAT GTCTTTGTGT GTGTCCCTTA TATATACTGT ATGCATCATT 
    TTGCATGGCA CGTGAATAAG AATGAGCTGG ATTTCATCTC ACTCGA

AT4G00080.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description
unfertilized embryo sac 11 (UNE11); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G62770.1); Has 574 Blast hits to 571 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 574; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00085.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: CTT)
Link
InterPro Scan - TAIR