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ET14160

CSHL Arabidopsis genetrap mutant lines

Original: ET14160

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14160

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13689 [Map]; Strand: c
      • AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -330; Region: promoter
      • AT4G00030.1 - [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G00040.1 - [+] show detail - Chalcone and stilbene synthase family protein
        Distance: -938; Region: promoter
    Flanking Genome Sequence: ET14160 - 3-prime edge 
    AACGGTAGAG TATTTTACCC GACCGGATCG AATCGGTTCA TCTCTCTCGA 
    CAAGCTGATC TCCGAGGAGG ATCGAGGTCT GAGAACCCAG AAAGACCCCA 
    AGAAGCGAGA TGAAATCGTG AACGCCATCG AATCCATGAC GGTTATCGGG 
    CGCAGCTCCA TCACCACAGA CGACTCTCTA TCTGCTACGT GGCGGCTCTT 
    GTGGACGACG GAGAAGGAAC AGTTGTTCAT CATAGAAAAG GCAGGCTTGT 
    TTGGGACGAC CGCCGGAGAC GTTTTGCAGG TGATCGATGT GAATAAACGG 
    ATCCTCAATA ACGTCATCAC TTTCCCGCCG GACGGGGTTT TCTTCGTACG 
    CTCCGATATC GATATCGCTT CCCCGCAGAG AGTCAATTTC AGGTTCCAAA 
    AACCACTTCT TCTTCGTACG CTCTGATATC GAAATGTGTA GCATCATAGC 
    TTAGTTGATA GCGTTTTTGA TATTCAGATT CAATAGTGCG GTATTGAGAG 
    GGAAGAACTG GGAGCTCCCA CTGCCACCAT TTGGGAAGGG CTGGTGAGTG 
    ACTTCTCTCT GTTTCCTCTT CGGAGCTACT TGTATAGATA AAGAGAGTGA 
    GTTTGGGTTT TGGTTCCACA GGTTTGAGAA TGTGTATATG G

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13634 [Map]; Strand: c
      • AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -275; Region: promoter
      • AT4G00030.1 - [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G00040.1 - [+] show detail - Chalcone and stilbene synthase family protein
        Distance: -993; Region: promoter
    Flanking Genome Sequence: ET14160 - 5-prime edge 
    CCTACTTTAT CCCTGGCTAA GCAGCTTCCT CTTGGCTCGC TGTGCTGGAT 
    TCGCGAAGAT CGAGCAGCTT GTTCGAAAAC CGGCACGACG AGTGCGGCGG 
    AGTGGAGGAG AACATGCCGA CAGCGAGAGC GCGAGCGCCA TGTTTGCAAA 
    TTGCAATTTC CATGGTTAGG TTGTTGCACG AAGAAGAAGA AGAGATACTC 
    TGTTATTTGG GTTTCTTTTC TAAAAAGCCC ATTTGGGTTT TATTTGCTTT 
    ATCCTCATGA GTCTAAGCCC AAGCCCAAGG AAATAGCTTG CACGTGCGCG 
    TCACGTGTCT ACGATAAAAC CCCAGCAACG GCGAGCGGCT TTGCCTTGCT 
    CATTCAACCT CGCTCGTCGT CGTCGTCGTC TCCACTTCGA TTTTTCAATC 
    AGTAATATTG GTGGTTCAGA GATGATGATG ATGAATCTTT TAAGGAGATC 
    AGCGATAGCC ATCGGCCGCC AATCAAAATC GAAACTGGCG TCGTTTTCCT 
    CCGCTACACA ACCTTGTTCC GGAATCCCAA AATCGGTAAG GCTTTC

AT4G00026.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00030.1

Model type
Protein coding
Short Description
Plastid-lipid associated protein PAP / fibrillin family protein
Computational Description
Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); Has 184 Blast hits to 184 proteins in 36 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00040.1

Model type
Protein coding
Short Description
Chalcone and stilbene synthase family protein
Computational Description
Chalcone and stilbene synthase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: phenylpropanoid biosynthetic process, biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT1G02050.1); Has 5683 Blast hits to 5679 proteins in 1391 species: Archae - 0; Bacteria - 1882; Metazoa - 0; Fungi - 67; Plants - 3528; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link
InterPro Scan - TAIR