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ET14205

CSHL Arabidopsis genetrap mutant lines

Original: ET14205

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14205

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 3418312 [Map]; Strand: w
      • AT2G07717.1 - [+] show detail - pseudogene, similar to NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3). (...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET14205 - 3-prime edge 
    ATCATACCGT TACCCGACCG GATCGTATCG GTCGTATTCT TGAATTTGGA 
    ATGAAAAGAA GAGTAATGCT TCCTAGC

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET14205 - 5-prime edge 
    AGCGACTATT TCTTCACAAC ATTTTGTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 779321 [Map]; Strand: c
      • AT5G03260.1 - [+] show detail - laccase 11
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET14205 - 5-prime edge 
    ATTAAGTACA AATAAAATCT CATCATTGCA TCAAACCGGA AAATTGAACC 
    GGAGATAAAG ATGGGTTTTC TCTTTCTATT C

AT2G07717.1

Model type
Pseudogene
Computational Description
pseudogene, similar to NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3). (Field mustard), blastp match of 99% identity and 2.0e-226 P-value to SP|Q04050|NU4M_BRACM NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3). (Field mustard) {Brassica campestris}
Link
InterPro Scan - TAIR

AT5G03260.1

Model type
Protein coding
Short Description
laccase 11
Curator Summary
putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
Computational Description
laccase 11 (LAC11); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Laccase/Diphenol oxidase family protein (TAIR:AT2G38080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR