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ET14210

CSHL Arabidopsis genetrap mutant lines

Original: ET14210

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14210

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 3418350 [Map]; Strand: w
      • AT2G07717.1 - [+] show detail - pseudogene, similar to NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3). (...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET14210 - 3-prime edge 
    ACCGGATCGT ATCGGTATAT TCATCTCTCT GCGACCATAT CGTACCGTTA 
    CCCGACCGGA TCGTATCGGT CGTATTCTTG AATTTGGAAT GAAAAGAAGA 
    GTAATGCTTC CT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7719068 [Map]; Strand: w
      • AT2G17760.1 - [+] show detail - Eukaryotic aspartyl protease family protein
        Distance: 2604; Region: intergenic
      • AT2G17770.1 - [+] show detail - basic region/leucine zipper motif 27
        Distance: -4035; Region: intergenic
    Flanking Genome Sequence: ET14210 - 5-prime edge 
    CCTGCACAGA GACAACCGTC TTCTCCATCC AACGGTTAGC ACTCATTTGG 
    CATTTAAACT CTTACTTTTT CTTTGTTTTT TTTCTGTTTT GTTTTGCTTT 
    CTAGTTTAAA TAATATACTA TAATTATTAC AACTACTAAT GTTACCGTCG 
    TACGATTCAG AGACAACCTA TTATTATAAC ATGTGCATAT CCAAGTGAAA 
    TCATCACAGT CAAAGAAACT CATGGGGGCA TTCTCGTTGT CCATCGGTTC

AT2G07717.1

Model type
Pseudogene
Computational Description
pseudogene, similar to NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3). (Field mustard), blastp match of 99% identity and 2.0e-226 P-value to SP|Q04050|NU4M_BRACM NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3). (Field mustard) {Brassica campestris}
Link
InterPro Scan - TAIR

AT2G17760.1

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Computational Description
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT4G35880.1); Has 2486 Blast hits to 2479 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 423; Plants - 1695; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G17770.1

Model type
Protein coding
Short Description
basic region/leucine zipper motif 27
Curator Summary
Encodes a paralog of bZIP transcription factor FD. This protein interacts with FD and FT.
Computational Description
basic region/leucine zipper motif 27 (BZIP27); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT4G35900.1); Has 164 Blast hits to 164 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR