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ET14223

CSHL Arabidopsis genetrap mutant lines

Original: ET14223

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14223

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 264492 [Map]; Strand: w
      • AT2G01570.1 - [+] show detail - GRAS family transcription factor family protein
        Distance: -6942; Region: intergenic
      • AT2G01580.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 552; Region: intergenic
    Flanking Genome Sequence: ET14223 - 5-prime edge
    CCTACTTTAT CCCTGCCATT ATATTTATAC CCTACTAATT AGTAAATTCA 
    TTATGCACGA AAGAAAGTCA AACATGATTG ATAAGTAGCT TCTTGTTTTG
    GTAACGTATT TTTTTTGGAT TTACCAAATA TAGACCACCA TATTCATGAT
    TCCAAGTCAT CAAAAATTGA CTACAAAATC ATGATTCCAA GTCTTTTATT
    TGGGAATATC TAATCATATA CGTAATCGTA ATGTACTAAT GTGGATTGGA
    AATGTTAGTG CAAAAAAGTC TTGTGACACC TGATGTAACA AGTACCAACC
    GACGTCGTTT AATTTATCCA TCAGAAACAT CACAGGTAAG AAGCAACCCA
    AAAACATCGT CGTATTTGCC ATCAAATGAG TAAAGGCAAT TATGTGGGTC
    TTTAAGATTC AACCAACTAC ACAGCAATGG AACGGACGGG TTCGCACCCA
    AAGCCCACCC AAAGCCCAAA GGGTCTCGAG AGAGCTTCAA GGAAACACTT
    TGCAACGAAT ACCTAATTTC CAAAGATTAC CTGATACCTG TGGTATGATC
    TTTTAGTCTC TACTGATGAC CTAATTATCG

AT2G01570.1

Model type
Protein coding
Short Description
GRAS family transcription factor family protein
Curator Summary
Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development.
Computational Description
REPRESSOR OF GA1-3 1 (RGA1); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor family protein (TAIR:AT1G14920.1); Has 2724 Blast hits to 2666 proteins in 317 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 4; Plants - 2709; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01580.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07510.2); Has 129 Blast hits to 129 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR