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ET14247

CSHL Arabidopsis genetrap mutant lines

Original: ET14247

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14247

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17742880 [Map]; Strand: c
      • AT3G48058.1 - [+] show detail
        Distance: 165; Region: intergenic
      • AT3G48060.1 - [+] show detail - BAH domain ;TFIIS helical bundle-like domain
        Distance: 234; Region: intergenic
    Flanking Genome Sequence: ET14247 - 5-prime edge 
    CCTACTTTAT CCCTGCACAG AACTGGGCAG TTAGAAAAAA AAGAAGTGAA 
    CAATCATCAG ATGGAATTGA CTCATCAATT CTTCCCACAC AGAATGTTTC 
    TGCACAATAG AGAAGCCAAT TTATAATCGT TACACAAACA TACAAAACTG 
    TATGAAGAAG CTAAAGGTTG GATAACCAAT GTCTAGTATT ACATAATATC 
    TTAGTTATAT ATTAAAAGAG TGAAGATTAT TTCAAGTTAC GAGAGACATC 
    CGTTGCGAGG CTTATGCTTC TTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17742835 [Map]; Strand: c
      • AT3G48058.1 - [+] show detail
        Distance: 120; Region: intergenic
      • AT3G48060.1 - [+] show detail - BAH domain ;TFIIS helical bundle-like domain
        Distance: 279; Region: intergenic
    Flanking Genome Sequence: ET14247 - 5-prime edge 
    AGTGACAATC ATCAGATGGA ATTGACTCAT CAATTCTTCC CACACAGAAT 
    GTTTCTGCAC AATAGAGAAG CCAATTTATA ATCGTTACAC AAACATACAA 
    AACTGTATGA AGAAGCTAAA GGTTGGATAA CCAATGTCTA GTATTACATA 
    ATATCTTAGT TATATATTAA AAGAGTGAAG ATTATTTCAA GTTACGAGAG 
    ACATCCGTTG CGAGGCTTAT GCTTCTTCTT CTCTTCACTC GA

AT3G48058.1

Model type
Pseudogene
Curator Summary
pseudogene of Rac-like GTP-binding protein
Link
InterPro Scan - TAIR

AT3G48060.1

Model type
Protein coding
Short Description
BAH domain ;TFIIS helical bundle-like domain
Computational Description
BAH domain ;TFIIS helical bundle-like domain; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: BAH domain ;TFIIS helical bundle-like domain (TAIR:AT3G48050.2); Has 5615 Blast hits to 3296 proteins in 434 species: Archae - 6; Bacteria - 1034; Metazoa - 2145; Fungi - 615; Plants - 463; Viruses - 15; Other Eukaryotes - 1337 (source: NCBI BLink).
Link
InterPro Scan - TAIR