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ET14249

CSHL Arabidopsis genetrap mutant lines

Original: ET14249

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14249

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 918593 [Map]; Strand: w
      • AT2G03090.1 - [+] show detail - expansin A15
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET14249 - 5-prime edge
    GCTTTGAAGG AAGATGTTAT ATTACATGAA CATTCTCTTT GAGAAAGTGC 
    AGAGCTTTAA TGGAGGAGAG TGAGAGAAAA AGGAATGAGA AGGAGAAAGA
    TAGTTTTGCT TTGATGGGAG TGAAGAAGGT TGATGGTTGA AGTGGAATTT
    ATAGAATGTT CATTTACTGC TTTAACTGTT TTCCCTACCT TTTATTTAGT
    TTTTACTTTT TGATCTTTCT TTACTTTAAA AAAAAAACTC TGCAAAAAAA
    AAGTTATTTT TGGGGTTTCA AGGGAGAATT TTTTATTTTG CACCAAAACA
    TATGGGCACA GCCGCTTGTA TTTTGAAACA TGGTTTTAAA AAAAAAAAAA
    AAAAATTGGT TTTTTTGGTA GTTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 918591 [Map]; Strand: w
      • AT2G03090.1 - [+] show detail - expansin A15
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET14249 - 5-prime edge
    CCTGCTTTGA AGGAAGTGTT ATATTACATG AACATTCTCT TTGAGAAAGT 
    GCAGAGCTTT AATGGAGGAG AGTGAGAGAA AAAGGAATGA GAAGGAGAAA
    GATAGTTTTG CTTTGATGGG AGTGAAGAAG GTTGATGGTT GAAGTGGAAT
    TTATAGAATG TTCATTTACT GCTTTAACTG TTTTCCCTAC CTTTTATTTA
    GTTTTTACTT TTTGATCTTT CTTTACTTTA AAAAAAAAAC TCTGCAAAAA
    AAAAGTTATA TTTAGGGTTT CAATGGTGAA TTTATTATTT TGCAGCAAAA
    CATATGGGCA CAAGCGCATG TACTTTGAAA CATGGTTTTA AGAAAAAAAA
    AAAAAAAATG GTTATTTTGG TAGTTATTGG AGTATATAAA CCCAAACATC
    ATTGAATGTT TTGTTACATT TGTGGGCTTG TT

AT2G03090.1

Model type
Protein coding
Short Description
expansin A15
Curator Summary
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A15 (EXPA15); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR