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ET14253

CSHL Arabidopsis genetrap mutant lines

Original: ET14253

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14253

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 45139 [Map]; Strand: w
      • AT5G01110.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -764; Region: promoter
      • AT5G01120.1 - [+] show detail - Protein of unknown function (DUF674)
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: ET14253 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACATGCA GATAAATCTA 
    CAATCTTTGA ATCGATAGAT CATGAATACC CAGAAAACGA AAAAGGCGGG 
    TTCTGTTTAT ATGTGCTAAA ATACGCAATG AACAGAAATC TCAGAAGAAG 
    ATAGACTAAT GTCCCAAAAC AAGGATAGGG TTTT

AT5G01110.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G05670.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01120.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF674)
Computational Description
Protein of unknown function (DUF674); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF674) (TAIR:AT5G43240.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR