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ET14301

CSHL Arabidopsis genetrap mutant lines

Original: ET14301

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14301

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1544010 [Map]; Strand: c
      • AT2G04450.1 - [+] show detail - nudix hydrolase homolog 6
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET14301 - 3-prime edge
    AAGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTTC TTATTGCACC 
    TGCAAAAGCA GTAAGTAAGA TGTATTATGT TTGTAACTAT GGTTTTGGAT
    TGGTTCTTGT TCAGCAATTT AGTTGGTAAT TTGACAGGAA GGGTTTGTGT
    GCCACCATGC CGAGAGGGAA TACACCATGC TTACATCTTG GATCGCTGAT
    GTTCCTAGTA CTCTTCCTGC CAATGCGTCT CATCGTATTG GAGTTGGTGC
    CTTTGTCCTA AACAAGAAGA CCAAAGAGGT AACAACTCTT TACCGTCTTC
    TTTTCTTGGT TC
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1543934 [Map]; Strand: c
      • AT2G04450.1 - [+] show detail - nudix hydrolase homolog 6
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: ET14301 - 5-prime edge
    TTTCTCCAGA TTGTCAAGCC CATCGGCAAG CTTTAACCAT ATCCCCTTCG 
    TCCCCTGCAA ATACATGTCT CAACTCATTG CCACTAGACT ACAAGTGTCT
    TCTAAAGAGT CTCTCTAAGT CTCAAATCTG AAGTGGTCTA TTAATGAAAT
    ACCTGATTGC TCCAATACAC AAGTGAAGCT CTCAGCTTTG GGACAAAATC
    CTCAATAGTC ATTGGTTCTG TCAAGTTCAC CTTAACACCT CCATAATTAT
    CTGCAACCCC TTGAAGTAAA AGGGACTCCT GAGCTTCACT GTCCATGCTA
    CAAAAAGAAC CAATCCATAT TCTAAGAAAA CTCAAGTTCC CAAAATCAAA
    TGTGAGTAAG AGAAGACATA CCCTTGAAGA AAGTTGAGTT ATTTGTGGTA
    TTGGAATGAT TTGAACTTCA GGTTTTATAA CAAGAAGCTG AGAGT

AT2G04450.1

Model type
Protein coding
Short Description
nudix hydrolase homolog 6
Curator Summary
Encodes a protein with NADH pyrophosphatase activity. Although this protein was also shown to have ADP-ribose diphosphatase activity in vitro, mutant analyses suggest that NUDX6 is involved in NADH metabolism in vivo.
Computational Description
nudix hydrolase homolog 6 (NUDT6); FUNCTIONS IN: hydrolase activity, ADP-ribose diphosphatase activity, NAD or NADH binding, NADH pyrophosphatase activity; INVOLVED IN: response to other organism, positive regulation of salicylic acid mediated signaling pathway; LOCATED IN: cytosol; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), Nudix hydrolase 6-like (InterPro:IPR003293), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: MutT/nudix family protein (TAIR:AT4G12720.3); Has 2998 Blast hits to 2996 proteins in 719 species: Archae - 33; Bacteria - 1649; Metazoa - 236; Fungi - 25; Plants - 166; Viruses - 14; Other Eukaryotes - 875 (source: NCBI BLink).
Link
InterPro Scan - TAIR