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ET14320

CSHL Arabidopsis genetrap mutant lines

Original: ET14320

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET14320

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18022235 [Map]; Strand: w
      • AT4G38530.1 - [+] show detail - phospholipase C1
        Distance: 0; Region: intron5 (CDS)
      • AT4G38540.1 - [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
        Distance: -886; Region: promoter
    Flanking Genome Sequence: ET14320 - 3-prime edge 
    GTTTTCATCC CTTTTTCACA CAAATATTAT TCAACCCTTT TTTAACAATG 
    TCAAACGATG ATGAGCCAGT TCCACTTACT TGCATGTTAA AAGCAACCAT 
    TTGAGCACCG TGTGTCCACC CAACATGAGG ATCGTAGTTT GACGAGTCCA 
    CTCTTGTGCC CTTTGGATAT ATCCTCACCA GATTCCTCTG GGTAAACCTG 
    TTTTTGTTTT TTTTCAAACT CTGACTCAGG TTCATCTTAT AACTCTTGAG 
    TCGAAAAAGG TTCAACATTA TGACTCCTCT CACTCTATAT TTTACCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18022342 [Map]; Strand: w
      • AT4G38530.1 - [+] show detail - phospholipase C1
        Distance: 0; Region: exon6 (CDS)
      • AT4G38540.1 - [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
        Distance: -779; Region: promoter
    Flanking Genome Sequence: ET14320 - 5-prime edge 
    CTTTCTCCCG ACTGGGAAGC AACTATGGAT AATGCAAGGA ATGTTCAGGG 
    GGAATGGTGG ATGTGGGTAC GTTAAAAAGC CTCGCATCTT GCTAGACGAG 
    CACACACTCT TCGACCCTTG CAAAAGGTTT CCCATTAAGA CCACTCTTAA 
    GGTTAAGATT TACACTGGCG AAGGATGGGA TTTGGATTTC CATCATACAC 
    ACTTTGATCA ATACTCTCCT CCAGATTTCT TCGTCAAGGT AAACAACAAC 
    TACTACTCTT CTTTTAAACT AGATTTCTTC GTAACTGTGT GTGTGTTGCA 
    TTTGCTGCAT CAGATTGGAA TAGCAGGAGT ACCGAGAGAC ACGGTCTCAT 
    ACAGAACGGA AACAGCTGTC GATCAGTGGT TTCCTATATG GGGCAACGAC 
    GAGTTCCTGT TTCAGCTGTC TGTTCCAGAA CTGGCGCTTC TGTGGTTCAA 
    AGTCCAAGAC TACGACAATG ACACCCAGAA TGATTTCGCA GGACAGACAT 
    GTCTTCCTCT GCCGGAACTG AAGTCCGGAG TTAGAGCCGT CCGGCTTCAC 
    GATCGAACAG GCAAGGCCTA CAAGAACACG AGGCTTCTCG TCAGCTTCGC 
    CTTGGATCCT CCTTATACGT TTCGTTGAAT CTCGTTTTCT TTC

AT4G38530.1

Model type
Protein coding
Short Description
phospholipase C1
Curator Summary
Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670.
Computational Description
phospholipase C1 (PLC1); FUNCTIONS IN: phospholipase C activity; INVOLVED IN: signal transduction, intracellular signaling pathway, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: phospholipase C1 (TAIR:AT5G58670.1); Has 2562 Blast hits to 1935 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 1702; Fungi - 403; Plants - 251; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38540.1

Model type
Protein coding
Short Description
FAD/NAD(P)-binding oxidoreductase family protein
Computational Description
FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: monooxygenase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Monooxygenase, FAD-binding (InterPro:IPR002938); BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT5G05320.1); Has 5392 Blast hits to 5382 proteins in 1070 species: Archae - 48; Bacteria - 3093; Metazoa - 5; Fungi - 1172; Plants - 539; Viruses - 0; Other Eukaryotes - 535 (source: NCBI BLink).
Link
InterPro Scan - TAIR