ET5639

CSHL Arabidopsis genetrap mutant lines

Original: ET5639

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET5639

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14009703 [Map]; Strand: c
      • AT4G28270.1 - [+] show detail - RING membrane-anchor 2
        Distance: -684; Region: promoter
      • AT4G28280.1 - [+] show detail - LORELEI-LIKE-GPI ANCHORED PROTEIN 3
        Distance: -982; Region: promoter
      • AT4G28280.2 - [+] show detail - LORELEI-LIKE-GPI ANCHORED PROTEIN 3
        Distance: -982; Region: promoter
    Flanking Genome Sequence: ET5639 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TAAACTGGAG AATACTAAGT 
    TTGCGACTAA AGCCTTAATC AAAGGCCTTA TCAACCAATA GTTGAATTAG 
    TTTATAGACC ACAAAGATAA TTAGGTTACA CGTCACGGAA GCAAGGAGCT 
    ATTGGTGTCA CCAGACCATA GTATTTAATT TCAAGTCTAT TAATTGTAGA 
    AGGCAACCCA AAATCCACTC CTTGAAATAA TAAAACACTG TCTTAAATTC 
    GTATTTGTTG AGTCCTTCAC CACCATTATG TCTGATTCTG CTTATATACA 
    AATTTAAGTA AGGTTGTTAG ACGGT

AT4G28270.1

Model type
Protein coding
Short Description
RING membrane-anchor 2
Curator Summary
Encodes a RING finger E3 ubiquitin ligase. Binds and ubiquitinates ABP1 in vivo and in vitro.
Computational Description
RING membrane-anchor 2 (RMA2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING membrane-anchor 1 (TAIR:AT4G03510.2); Has 2577 Blast hits to 2577 proteins in 254 species: Archae - 0; Bacteria - 0; Metazoa - 1370; Fungi - 347; Plants - 593; Viruses - 12; Other Eukaryotes - 255 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G28280.1

Model type
Protein coding
Short Description
LORELEI-LIKE-GPI ANCHORED PROTEIN 3
Computational Description
LORELEI-LIKE-GPI ANCHORED PROTEIN 3 (LLG3); BEST Arabidopsis thaliana protein match is: LORELEI-LIKE-GPI ANCHORED PROTEIN 2 (TAIR:AT2G20700.1); Has 124 Blast hits to 124 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G28280.2

Model type
Protein coding
Short Description
LORELEI-LIKE-GPI ANCHORED PROTEIN 3
Computational Description
LORELEI-LIKE-GPI ANCHORED PROTEIN 3 (LLG3); BEST Arabidopsis thaliana protein match is: LORELEI-LIKE-GPI ANCHORED PROTEIN 2 (TAIR:AT2G20700.1).
Link
InterPro Scan - TAIR