ET5853

CSHL Arabidopsis genetrap mutant lines

Original: ET5853

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET5853

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1957905 [Map]; Strand: w
      • AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: intron1 (CDS)
      • AT3G06433.1 - [+] show detail - pseudogene, expressed protein
        Distance: -996; Region: promoter
    Flanking Genome Sequence: ET5853 - 3-prime edge 
    ANGATNNGNN CCACCGTTTT CATCCCTAGT TACAAGCTCT CGAGGTATTT 
    CGATTTTCTC TCTTCTCGTT CATGTTTGAT TGAATTTGAA CTCAATTTTG 
    AATCACGAAG TATAATTTAG CTGAAAGATG ATTTTGATTG AATTGGGTAT 
    TTTGTTGATG ATCTTAGGTT TTTGATATGT TGAGGGAACA AACATTTTAT 
    CAACCAAAGG AAGGAACTTA CATGAAGCTG CTTGTTCNTC TCTCTCGACG 
    AAANACACTT CNCNTCNTCT TCNTATCCTA CACNNAANAA AAATGGTNNA 
    TAANATTCGT TGATTTCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25741994 [Map]; Strand: c
      • AT1G68560.1 - [+] show detail - alpha-xylosidase 1
        Distance: -3992; Region: intergenic
      • AT1G68570.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -4742; Region: intergenic
    Flanking Genome Sequence: ET5853 - 5-prime edge 
    ATCTTTTANT ATGCTTTTGG GCGATGAGNC GGACAAAGTT TCAGTGACGG 
    TGTTAACCCA TCCGTTAGCT TTGCTTCTCC TGTCAAGTTT CTTCTTCACA 
    TTCTTTATCG GAGTTCATCT CACTCGANGA ATNATTGTAT TAATAAATTT 
    TATTTTATTT AGAGTANTGN CAGGAACTCT ATGATGAGTT NAGACGGACT 
    ACGTAAGATG TAGAACATTA ACNTGGGATN TGTGGTGTAA ATGTTTTAGA 
    GTTAGAAACT AAACTAACAC TAAAATGAAA ATTTTGGAAA AATAAAATTA 
    TAATAGGATA TTGAAAATTT TGTCAAACAT TGGCTTATGC TTATCAATGT 
    TTTTTAGAAT TTAATTTAAC AGTGTAGGGT CTCTATAAAC GTATAAATCA 
    TCTTTGGCAA TATAATATGG ATATATGTAA GCTGATTAAA CCAGTGTATG 
    TGACCAATAA ACAGCAATGG ATTCACAATA AGGTCATATT AATTTGAACC 
    AAACCTTTAG GCTAAGAACC AACCATATGT GTGGATCCTC TTCTCATAGA 
    CACTACAGTT TGGGCTCACT TCTTGTATCT GCGTAACATT TCGGGCCAAT 
    GTTCATCTCT CTCGANGAA

AT1G68560.1

Model type
Protein coding
Short Description
alpha-xylosidase 1
Curator Summary
Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.
Computational Description
alpha-xylosidase 1 (XYL1); FUNCTIONS IN: xyloglucan 1,6-alpha-xylosidase activity, xylan 1,4-beta-xylosidase activity, alpha-N-arabinofuranosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to cadmium ion, xylan catabolic process, xyloglucan metabolic process; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolases family 31 protein (TAIR:AT3G45940.1); Has 6339 Blast hits to 5059 proteins in 1114 species: Archae - 86; Bacteria - 4145; Metazoa - 817; Fungi - 695; Plants - 269; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G68570.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 1 (TAIR:AT3G54140.1); Has 5938 Blast hits to 5565 proteins in 1029 species: Archae - 0; Bacteria - 2262; Metazoa - 736; Fungi - 385; Plants - 2206; Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06430.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
embryo defective 2750 (EMB2750); INVOLVED IN: pollen tube development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 31867 Blast hits to 12007 proteins in 283 species: Archae - 3; Bacteria - 31; Metazoa - 288; Fungi - 376; Plants - 30037; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06433.1

Model type
Pseudogene
Curator Summary
pseudogene of nodulin MtN3 family protein
Computational Description
pseudogene, expressed protein
Link
InterPro Scan - TAIR