ET5966

CSHL Arabidopsis genetrap mutant lines

Original: ET5966

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET5966

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12382257 [Map]; Strand: c
      • AT2G28840.2 - [+] show detail - XB3 ortholog 1 in Arabidopsis thaliana
        Distance: 1583; Region: intergenic
      • AT2G28850.1 - [+] show detail - cytochrome P450, family 710, subfamily A, polypeptide 3
        Distance: 1223; Region: intergenic
    Flanking Genome Sequence: ET5966 - 5-prime edge 
    TATTGGGGTG TTGGNAAGGG TACTTTAGCT AACTACTTTC TNCTCTGNCN 
    AGAANNAACT GNACTNGGGA AACGGAAAAT AAAATGGATA TTTTTATGTG 
    GCACGAAAGT CTAGGGGGAG CTAGAGAAAC TGATTGGATC ATATTATGTC 
    GATATTATAT ATCGAAATTA GTTTCTTGGT GGGTTAAGGT ATCTAATCTA 
    AATCTGCTTT CATCAACCCT TGGGTCGGGT CCATAACCCG ACAACTAATT 
    ATACCACCAG GGGGGTGGGT CCGAAAAGTT AGAATTGAAA TGTAAAAGCC 
    TGACAAACTT ACACAATTGT GACTAGAGGT GGAATTACTA AGTACCAAAA 
    CTGGGACAGG TTTAAGCATC ATAAATTGCC CAATTGTGTT TAGCGATGAA 
    ATTACTATCA AAGATTTAAA ATCCTATTTA ATATTTCATC ACACCCATTC 
    TAAATT

AT2G28840.2

Model type
Protein coding
Short Description
XB3 ortholog 1 in Arabidopsis thaliana
Computational Description
XB3 ortholog 1 in Arabidopsis thaliana (XBAT31); FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 3 in Arabidopsis thaliana (TAIR:AT5G07270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G28850.1

Model type
Protein coding
Short Description
cytochrome P450, family 710, subfamily A, polypeptide 3
Curator Summary
member of CYP710A
Computational Description
cytochrome P450, family 710, subfamily A, polypeptide 3 (CYP710A3); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: stem, petal, root cap of the primary root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 710, subfamily A, polypeptide 4 (TAIR:AT2G28860.1); Has 27180 Blast hits to 27131 proteins in 1508 species: Archae - 46; Bacteria - 3035; Metazoa - 10578; Fungi - 5082; Plants - 7553; Viruses - 0; Other Eukaryotes - 886 (source: NCBI BLink).
Link
InterPro Scan - TAIR