ET7188

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET7188

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 4; Position: 16570188 [Map]; Strand: w
- AT4G34720.1 - [+] show detail - ATPase, F0/V0 complex, subunit C protein
  Distance: -893; Region: promoter
- AT4G34730.1 - [+] show detail - ribosome-binding factor A family protein
  Distance: 0; Region: intron3 (CDS)

TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAATACCA TGTACGGTTA 
TCACTATGAG CAGAAACTGA ATTGGAGACT GTTTCAGGTA ATTGCAATAC 
TGGACAAAAT AAAAGCTGAG AAAGGAAGCG GTGAAGGGAA AACAGAACCA 
TCTGACTCAA CAGAAGATGA TCAAGATTGG GAAGTGGATG ACCCCGACGA 
AGACATAATC TATGTAAAGT AATGGTCTGA AGCCGTTTAA GCAACGAGTG 
CATATTACTC TGATAGAACG CTCCGCGGTA AGTCATCATA TGTGCTCAAC 
TCATCTATGA GCTTGGTTTA GGAGAGATCA TTCATCTTAG TGCATGTCAG 
TCATATGAAC AGAAAGCATT GGATAATATA TGCTGCTGAA AAGCATCTAA 
TAGAAACAAG TGTTAATAAA TCAACGCATG ACTCTGAAGA GAATCATTTT 
CCATGTTTTG TGTGAAGTTG TTGGACAAGA CTAAGGCGGA ATGGAGAACC 
GGAGAAGATG AATACCGATG GTAGTTACTC ATTATGAAGC CTGAAAGCTT 
CTTTGGTCCA TTACTCGGGG ATCTCTCCAA CAAATTGTTA TTTTGGATAA 
TATCAGTGTA A

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 16570269 [Map]; Strand: w
  - AT4G34720.1 - [+] show detail - ATPase, F0/V0 complex, subunit C protein
    Distance: -974; Region: promoter
  - AT4G34730.1 - [+] show detail - ribosome-binding factor A family protein
    Distance: 0; Region: intron3 (CDS)
Flanking Genome Sequence: ET7188 - 5-prime edge
```
TGATGGTATT ACAATTGCTT GACTGACTAT ATCAGCATCC ACCAAGTTCC 
GGTTTCTAAT ATAGCACAGA AGAGGTGATT TTCAGAGAAG ACAATCAACA 
AGATCAACTA GTTCATGCTC TCTCGACTAA TGACTATGAA TGCAAGATAG 
AGATTTTGAC CGCATCATTG AGACATTCAT TTACTAACTG AAGACTAAAT 
TTCATTAAAC GCTAGTTTAC TTTAAGTGAA AGATATATTA GAATCCCTTA 
CCCTGCTTCC TCTTTCCATG GCTT
```
5 prime edge [+] show sequence
1. Chromosome: 4; Position: 16570260 [Map]; Strand: w
  - AT4G34720.1 - [+] show detail - ATPase, F0/V0 complex, subunit C protein
    Distance: -965; Region: promoter
  - AT4G34730.1 - [+] show detail - ribosome-binding factor A family protein
    Distance: 0; Region: intron3 (CDS)
Flanking Genome Sequence: ET7188 - 5-prime edge
```
CTTTCTCCCT GATGGTATTA CAATTGCTTG ACTGACTATA TCAGCATCCA 
CAAGTTCCGG TTTCTAATAT AGCACAGAAG AGGTGATTTT CAGAGAAGAC 
AATCAACAAG ATCAACTACA TATGGTACTG TCAACTGGAC TA
```

AT4G34720.1

Model type: Protein coding
Short Description: ATPase, F0/V0 complex, subunit C protein
Curator Summary: vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p1)
Computational Description: AVA-P1; FUNCTIONS IN: ATPase activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: vacuolar-type H(+)-ATPase C3 (TAIR:AT4G38920.1); Has 2722 Blast hits to 2495 proteins in 678 species: Archae - 169; Bacteria - 703; Metazoa - 633; Fungi - 468; Plants - 344; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G34730.1

Model type: Protein coding
Short Description: ribosome-binding factor A family protein
Computational Description: ribosome-binding factor A family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome-binding factor A, conserved site (InterPro:IPR020053), K homology-like, alpha/beta (InterPro:IPR015946), Ribosome-binding factor A (InterPro:IPR000238); Has 4827 Blast hits to 4826 proteins in 1979 species: Archae - 0; Bacteria - 4129; Metazoa - 5; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 652 (source: NCBI BLink).
Link: InterPro Scan - TAIR