ET7194

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET7194

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 1; Position: 8959345 [Map]; Strand: c
- AT1G25510.1 - [+] show detail - Eukaryotic aspartyl protease family protein
  Distance: 0; Region: exon1 (3UTR)

ACTTTTCCTT TTCATTGTAA CTCAAATATA TTTATAGAAA AAACAGCTTA 
GCATTTTTGT TTTTTTTGAT GAAAACAGCT TAGCATTTAT TAGACGAGAA 
TCCAATGAGA GAATTTGCCA AATCGAAAGT GACACGTGTC CCTTGTTGCT 
GCACGTTTCC GATAATCGCT AGTGAACTCG CCGTCGGTGC AAATGCCAAA 
CAAAATGTCC CCACCGAGTC AACCGGAATC ATGTAGTTCT TCGCCGGCAA 
AGCCAAAATC TTCCCGCCGG GGAAATGAAA AGCCACGGTC GGGACTTCTA 
CCGTCGTCTT AGCCGAAAGG TTATAACACG TGTCAAACAT CGCCACCCCG 
GCTGCTTTTT CCAA

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 8959074 [Map]; Strand: c
  - AT1G25500.3 - [+] show detail - Plasma-membrane choline transporter family protein
    Distance: -1096; Region: intergenic
  - AT1G25510.1 - [+] show detail - Eukaryotic aspartyl protease family protein
    Distance: 112; Region: intergenic
Flanking Genome Sequence: ET7194 - 5-prime edge
```
AACAATGAAT CTTGAGGGGC CTTGTTACAG GTCACATCAC ACACGAATGA 
ATGACTCCTT CTTTTCTATG ACGCATGAAT ACTCGTAGTG TTGAGAGTTA 
AAGCCCAAAT ACAATGTGTG
```

AT1G25500.3

Model type: Protein coding
Short Description: Plasma-membrane choline transporter family protein
Computational Description: Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G25510.1

Model type: Protein coding
Short Description: Eukaryotic aspartyl protease family protein
Computational Description: Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G18490.1); Has 4139 Blast hits to 4120 proteins in 342 species: Archae - 0; Bacteria - 0; Metazoa - 1183; Fungi - 740; Plants - 2035; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).
Link: InterPro Scan - TAIR