ET8170

CSHL Arabidopsis genetrap mutant lines

Original: ET8170

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET8170

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 198700 [Map]; Strand: c
      • AT2G01440.1 - [+] show detail - DEAD/DEAH box RNA helicase family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET8170 - 5-prime edge 
    AATTTCTTCT TCTCCAAAGT CTGGAACATA TCTTATCGTT CAAAGCATAA 
    ATATTCTGAC AATCTTCTTG AGCAAGTTGA GAAGTATGCC TCTGCTCGGC 
    TCGAGAATTA TTCCAAGTTG ATTACTAATG TGGGGGGGGG TTTCATTGTC 
    TCATCTGAAA CATTCTATAT AGATTTTGAG ATTAATGT

AT2G01440.1

Model type
Protein coding
Short Description
DEAD/DEAH box RNA helicase family protein
Computational Description
DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: ATP-dependent DNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA repair, DNA recombination; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA helicase, ATP-dependent, RecG (InterPro:IPR004609), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT3G02060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR