F00521

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00521

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00521

Determination of introduced cDNA(s)

  • RAFL07-14-P04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-14-P04 - Resource: pda17332

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-14-P04 - full reading 
    GATATTTCTC TCTCTACTGT GTTTAGAAAT TGGAATCTTC TCTCTTCTCT 
    ATCTCCCTCT CTCTTAAAAA GGGACCGTAC ACGTCTCTCT CTATTTCCAG 
    TAAAAAATCG AAATTTCGTA TAATTTCCTC AGTCCCGTAA TTTTCTCCTT 
    TTTTTTCTTC CCCAATTCCT TCAATTTTCG AATTCGCCTC TCTGTTTCGT 
    TCCTCGTAGA CGAAGAAGAA GAAGAATCTC AGGTTTTAGC TTTCGAAGCT 
    TCCAAAATTT TGAATTTTGA TCTTCTGGGC TCTTTTGTAA ATCAGACTGA 
    AGATATTTAG ATTACCCAGA AGTTGTTCAA GGAATGGTTT CAGTGGACAG 
    CACGGAAAGA TAAAAGAGAC TTTTTTTTCC AGATTTTGCT GATCCAAAAT 
    CTGAATAGTT GTTCATGTTC TTGGATCAAA TCTGGAAAGA GGAAGTTTGT 
    TGGATCTAGA AGAAGATAAC AATGTTGGAT TCTCTAGTGT CGAAACTGCC 
    TTCGTTATCG ACATCTGATC ACGCTTCTGT GGTTGCGTTG AATCTCTTTG 
    TTGCACTTCT TTGTGCTTGT ATTGTTCTTG GTCATCTTTT GGAAGAGAAT 
    AGATGGATGA ACGAATCCAT CACCGCCTTG TTGATTGGGC TAGGCACTGG 
    TGTTACCATT TTGTTGATTA GTAAAGGAAA AAGCTCGCAT CTTCTCGTCT 
    TTAGTGAAGA TCTTTTCTTC ATATATCTTT TGCCACCCAT TATATTCAAT 
    GCAGGGTTTC AAGTAAAAAA GAAGCAGTTT TTCCGCAATT TCGTGACTAT 
    TATGCTTTTT GGTGCTGTTG GGACTATTAT TTCTTGCACA ATCATATCTC 
    TAGGTGTAAC ACAGTTCTTT AAGAAGTTGG ACATTGGAAC CTTTGACTTG 
    GGTGATTATC TTGCTATTGG TGCCATATTT GCTGCAACAG ATTCAGTATG 
    TACACTGCAG GTTCTGAATC AAGACGAGAC ACCTTTGCTT TACAGTCTTG 
    TATTCGGAGA GGGTGTTGTG AATGATGCAA CGTCAGTTGT GGTCTTCAAC 
    GCGATTCAGA GCTTTGATCT CACTCACCTA AACCACGAAG CTGCTTTTCA 
    TCTTCTTGGA AACTTCTTGT ATTTGTTTCT CCTAAGTACC TTGCTTGGTG 
    CTGCAACCGG TCTGATAAGT GCGTATGTTA TCAAGAAGCT ATACTTTGGA 
    AGGCACTCAA CTGACCGAGA GGTTGCCCTT ATGATGCTTA TGGCGTATCT 
    TTCTTATATG CTTGCTGAGC TTTTCGACTT GAGCGGTATC CTCACTGTGT 
    TTTTCTGTGG TATTGTGATG TCCCATTACA CATGGCACAA TGTAACGGAG 
    AGCTCAAGAA TAACAACAAA GCATACCTTT GCAACTTTGT CATTTCTTGC 
    GGAGACATTT ATTTTCTTGT ATGTTGGAAT GGATGCCTTG GACATTGACA 
    AGTGGAGATC CGTGAGTGAC ACACCGGGAA CATCGATCGC AGTGAGCTCA 
    ATCCTAATGG GTCTGGTCAT GGTTGGAAGA GCAGCGTTCG TCTTTCCGTT 
    ATCGTTTCTA TCTAACTTAG CCAAGAAGAA TCAAAGCGAG AAAATCAACT 
    TTAACATGCA GGTTGTGATT TGGTGGTCTG GTCTCATGAG AGGTGCTGTA 
    TCTATGGCTC TTGCATACAA CAAGTTTACA AGGGCCGGGC ACACAGATGT 
    ACGCGGGAAT GCAATCATGA TCACGAGTAC GATAACTGTC TGTCTTTTTA 
    GCACAGTGGT GTTTGGTATG CTGACCAAAC CACTCATAAG CTACCTATTA 
    CCGCACCAGA ACGCCACCAC GAGCATGTTA TCTGATGACA ACACCCCAAA 
    ATCCATACAT ATCCCTTTGT TGGACCAAGA CTCGTTCATT GAGCCTTCAG 
    GGAACCACAA TGTGCCTCGG CCTGACAGTA TACGTGGCTT CTTGACACGG 
    CCCACTCGAA CCGTGCATTA CTACTGGAGA CAATTTGATG ACTCCTTCAT 
    GCGACCCGTC TTTGGAGGTC GTGGCTTTGT ACCCTTTGTT CCAGGTTCTC 
    CAACTGAGAG AAACCCTCCT GATCTTAGTA AGGCTTGAGG GTAACGTGGA 
    AGAAAAGCTT TGATTTTTTT TGGTAGAAAA GGGTGATTCA AATTATGCTT 
    TTGTGTAAAT TATCCATTTG TAATATTGTT TGTGAGGACA GAAATCTGTC 
    CTAACGTTTT GAGAGCAGAA AGCAAAACAT GGCAACTTTG AAGTGTTTGA 
    TTGATGTATG TAATTATATT CATATTTGTT TTGTTGTAAC ACAAACTACA 
    CATTTGTTTA TGTTTTGAAT TTGGTTTTTG CTTCGGAAAA AAAAAA

    Gene models with high sequence identity

    1. AT5G27150.1 [+] show detail - Na+/H+ exchanger 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Na+/H+ exchanger, isoforms 1-4, conserved region 5.3e-186
    HMMPanther Cation/H+ exchanger, conserved region 5.3e-186
    HMMPfam Cation/H+ exchanger 1.2e-59
    FPrintScan Na+/H+ exchanger, conserved region 1.7e-11
    FPrintScan Na+/H+ exchanger, conserved region 1.7e-11
    FPrintScan Na+/H+ exchanger, conserved region 1.7e-11
    FPrintScan Na+/H+ exchanger, conserved region 1.7e-11
    HMMTigr Na+/H+ exchanger, subfamily 6.4e-20

    See the detailed result >

    AT5G27150.1

    Model type
    Protein coding
    Short Description
    Na+/H+ exchanger 1
    Curator Summary
    Encodes a vacuolar sodium/proton antiporter involved in salt tolerance, ion homeostasis, and leaf development.
    Computational Description
    Na+/H+ exchanger 1 (NHX1); FUNCTIONS IN: protein binding, sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: response to salt stress, lithium ion transport, sodium ion transport, leaf development; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 1-4, conserved region (InterPro:IPR018407); BEST Arabidopsis thaliana protein match is: sodium hydrogen exchanger 2 (TAIR:AT3G05030.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR