F01019

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01019

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01019

Determination of introduced cDNA(s)

  • RAFL11-02-I02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-02-I02 - Resource: pda10057

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-02-I02 - full reading 
    ATTCGTCTCA GAGGCCGAGG TTGAAGATTA ATCGGACAAA GGAGATTAGA 
    AGAGTAGAAA AAACGACAAG AAGAAAGAAA CACAGTTGCA GGAGAGAAAG 
    AGATATGGCT GTCCGGATAA ACGCGATGGC GGTGACGTTT GTGGCGCACG 
    CGCTGGCGGT AATAGCGGCG ATTATGGTAC TGGTTTGGAG TATCAGTTAC 
    AGAGGTGGAT TGGCCTGGGA AGCTACTAAC AAGAATCTCA TCTTCAATCT 
    GCATCCTGTT CTGATGCTCA TCGGATTTAT AATCTTGGGA GGAGAAGCCA 
    TCATAAGTTA CAAATCGCTT CCGCTGGAGA AACCAGTGAA GAAGTTGATC 
    CACCTTATAC TCCATGCCAT TGCTCTGGCT CTTGGGATAT TTGGCATCTG 
    TGCAGCCTTT AAGAACCACA ATGAAAGCCA TATCCCTAAT CTCTACAGTC 
    TCCATTCCTG GATTGGTATT GGAGTCATTT CTCTTTATGG CTTCCAGTGG 
    GTGTACAGCT TCATAGTGTT CTTCTTCCCA GGAGGATCAA CAAATTTGAA 
    AAGCGGATTG CTTCCGTGGC ACGCAATGCT TGGCCTGTTT GTTTACATAC 
    TTGCTGTCGG GAATGCAGCT TTAGGGTTTC TGGAAAAGCT GACTTTCTTG 
    GAGAATGGAG GGCTTGACAA GTATGGATCC GAAGCATTTC TTATCAACTT 
    CACGGCCATT ATCACTATTC TCTTTGGTGC CTTTGTGGTA CTCACTGCTT 
    CTGCTGAGTC TCCTTCTCCT TCTCCTTCCG TCTCCAATGA TGATAGTGTT 
    GACTTCAGTT ATTCTGCTAT ATAAAACACT TTCTACATTC CACGTTACAT 
    CTGTATCGCC CCTTGTACTC TCAAAACTCC ATTTATGTAT GATGCATTTG 
    TAGCGAAAAG CTTTGTGTGT TACGGCTTTG CTACTTCTGG TGTGTAAAAT 
    CTTCAATGAT ATTGATGAAT CTTTTAAATC ATTTTCTTTT CTTTTCT

    Gene models with high sequence identity

    1. AT4G25570.1 [+] show detail - Cytochrome b561/ferric reductase transmembrane protein family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Cytochrome b561/ferric reductase transmembrane 47.577
    HMMPfam Cytochrom_B561 2e-46
    HMMSmart Cytochrome b561/ferric reductase transmembrane 1.2e-54
    HMMPanther CYTOCHROME B561 5.2e-103

    See the detailed result >

    AT4G25570.1

    Model type
    Protein coding
    Short Description
    Cytochrome b561/ferric reductase transmembrane protein family
    Curator Summary
    Encodes cytochrome b561.
    Computational Description
    ACYB-2; FUNCTIONS IN: carbon-monoxide oxygenase activity; LOCATED IN: integral to membrane, chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: cytochrome B561-1 (TAIR:AT5G38630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR