F01334

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01334

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01334

Determination of introduced cDNA(s)

  • RAFL08-10-I18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-10-I18 - Resource: pda04596

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-10-I18 - full reading 
    AACTTTACTG TCCGGCGTAC TCAGCACCAT CAATGGACCG CCCGGAGACG 
    ATCGCCGTCA AATGCGAACC CATGACCGTT GACTCTCCTT CTCGACCTCT 
    AAAGCTTGTA GTTTTTAGCT GACCTTAATT TCAATCCTCC TGAGACTGAT 
    GATCTTGACT CATCCATTCC AATCCCTACT CCTCCTCCCA TCACTAGGTT 
    GAGTAACGAG GAAAGTCATC AAGAGGGAGG TATATTAACA TGCAAGGAGG 
    TGGAACCAGG AGAAGTAGAA GCCAAAAAGA TCAGCAAGGT GGGAAAATGC 
    CGCTCCAGAA GTAAGATTGA GTCTTCCTCT GATTGTGGAG TTGATGCAGA 
    TGGTGATCTG GCTAATCAAG GGGTCCCTGC ATCCCGGGAA GAAAAAATCA 
    GTAACCTCAA AATGGGTTTG ATTCATGTTG CAAGGAAGAT GCCCAAAAAT 
    GCTCATGCCC ATTTTATACT TGGTCTTATG TTTCAACGAT TGGGCCAATC 
    TCAAAAGGCG ATACCAGAAT ATGAGAAAGC TGAAGAGATC TTACTGGGTT 
    GTGAGCCAGA AATTGCTCGG CCAGAACTTC TCTTATTAGT TCAAATTCAC 
    CATGGACAGT GTCTTCTTTT GGATGGTTTT GGGGATACTG ACTCTGTTAA 
    AGAGCTTGAG GGAGAAGAGC TTGAAGAAAT TCTTTCAAAA TTAAAGGATT 
    CTATAAAGTT AGATGTTAGA CAGGCAGCCG TGTGGAATAC CCTTGGTTTA 
    ATGCTTCTCA AAGCTGGTTG TTTGATGAGT GCCATATCAG TTTTGTCATC 
    CTTGTTGGCT CTTGTTCCTG ACAATTATGA TTGCCTTGCA AACCTTGGAG 
    TTGCTTATCT TCAAAGTGGC GATATGGAGC TTTCAGCAAA ATGTTTTCAA 
    GATTTGGTAC TGAAAGACCA TAACCATCCT GCCGCTTTGA TAAATTATGC 
    TGCCGAGCTT CTCTGCAAAC ACAGTTCAAC TGTTGCTGGT GCCGGGGCTA 
    ATGGTGGTGC TGATGCTTCT GAAGATCAGA AGGCACCTAT GAATGTCGCA 
    AAGGAATGTC TCTTGGCTGC TCTAAGATCA GATCCAAAGT CTGCCCATGC 
    GTGGGTGAAT CTTGCTAATT CATACTATAT GATGGGTGAT CACAGAAGCT 
    CGAGCAAATG TTTGGAGAAG GCAGCCAAGC TTGATCCCAA CTGTATGGCT 
    ACTAGATTTG CTGTTGCTGT CCAACGAATC AAAGATGCAG AAAGGTCTCA 
    GGATGCAAGC GACCAGCTTT CATGGGCTGG CAACGAGATG GCTTCAGTGA 
    TAAGAGAAGG AGAATCTGTT CCAATTGACC CTCCCATTGC TTGGGCAGGG 
    CTTGCCATGG CTCACAAGGC TCAGCATGAA ATTGCAGCTG CTTTTGTTGC 
    TGACCGAAAT GAATTGACAG AGATGGAAGA GCGGGCTGTG TACAGCTTAA 
    AGCAGGCAGT AACAGAGGAT CCTGAAGATG CTGTCCGGTG GCATCAGCTC 
    GGTCTTCATA GTCTCTGCTC TCAACAATAT AAACTCTCCC AAAAATACCT 
    AAAGGCAGCA GTTGGTCGTT CTAGAGAGTG TAGTTATGCA TGGTCAAATC 
    TCGGTATTTC GCTGCAGTTA TCAGATGAAC ATTCAGAAGC TGAGGAAGTA 
    TACAAGCGAG CCTTGACCGT GTCAAAAGAG GATCAAGCTC ACGCGATATT 
    GTCTAACCTG GGGAACCTCT ACAGACAGAA AAAGCAGTAC GAAGTCTCAA 
    AGGCAATGTT CTCAAAGGCG TTGGAACTCA AACCTGGTTA TGCACCCGCA 
    TACAACAACC TTGGACTCGT GTTTGTGGCT GAACGCAGAT GGGAAGAAGC 
    GAAGTCTTGT TTCGAGAAAT CCCTTGAAGC TGATTCATTG CTAGATGCAG 
    CACAGTCTAA CTTGCTTAAA GCCACAACCA TGTCAAGGCT CTGTACTTGC 
    TTCTCTTCTT CAACTGTTGT CCGAGATTCT TGATGCTCTG TAATACTTCT 
    TGTTTCGTTT TGTGGTTTCA CAACTCTCAC ATTATGTGCC TTGAATAGTA 
    TTAAGTACAA AGACCAC

    Gene models with high sequence identity

    1. AT5G63200.1 [+] show detail - tetratricopeptide repeat (TPR)-containing protein
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein prenylyltransferase 8.9e-29
    superfamily TPR-like 1e-28
    HMMSmart Tetratricopeptide repeat 11
    HMMSmart Tetratricopeptide repeat 14
    HMMSmart Tetratricopeptide repeat 1.5
    HMMSmart Tetratricopeptide repeat 6.1e-06
    HMMSmart Tetratricopeptide repeat 420
    HMMSmart Tetratricopeptide repeat 0.012
    HMMSmart Tetratricopeptide repeat 0.0024
    HMMSmart Tetratricopeptide repeat 0.0036
    HMMPanther TETRATRICOPEPTIDE REPEAT PROTEIN, TPR 9.9e-29
    Gene3D Tetratricopeptide-like helical 1.5e-16
    Gene3D Tetratricopeptide-like helical 3.4e-39
    HMMPfam Tetratricopeptide TPR-1 1.2e-06
    HMMPfam Tetratricopeptide TPR-1 0.00011
    HMMPfam Tetratricopeptide TPR-1 0.00013
    ProfileScan Tetratricopeptide repeat 6.962
    ProfileScan Tetratricopeptide repeat 8.024
    ProfileScan Tetratricopeptide repeat 6.992
    ProfileScan Tetratricopeptide repeat 10.266
    ProfileScan Tetratricopeptide repeat 9.381
    ProfileScan Tetratricopeptide repeat 10.237
    ProfileScan Tetratricopeptide repeat 9.086
    ProfileScan Tetratricopeptide repeat-containing 7.644
    ProfileScan Tetratricopeptide repeat-containing 12.865
    ProfileScan Tetratricopeptide repeat-containing 26.204

    See the detailed result >

    AT5G63200.1

    Model type
    Protein coding
    Short Description
    tetratricopeptide repeat (TPR)-containing protein
    Computational Description
    tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 18351 Blast hits to 10064 proteins in 1197 species: Archae - 736; Bacteria - 8120; Metazoa - 2665; Fungi - 514; Plants - 588; Viruses - 0; Other Eukaryotes - 5728 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR