F01423

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01423

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01423

Determination of introduced cDNA(s)

  • RAFL06-10-O06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-10-O06 - Resource: pda17175

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-10-O06 - full reading 
    GAATCTTAGT AATAATCCCA AAAACCAGAA AAAAAGGAGC TTTGCTTTTG 
    TAGGAATTAA TGGATTCAGT GAACTCCTTC AAAGGATATG GAAAAGTAGA 
    CGAAGCTCAA GATTTAGCAT TGAAGAAAAA GACAAGAAAA CGTCTACTTC 
    TACTATCCAT CTCCGTCGTA GTTCTCATCG CCGTAATAAT CGCCGCCGTA 
    GTCGCCACCG TCGTTCACAA GAACAAAAAC GAGTCAACAC CGAGTCCACC 
    TCCCGAGTTA ACACCATCCA CTTCACTCAA AGCCATTTGC AGTGTAACTC 
    GTTTCCCTGA ATCTTGCATT TCAAGTATCT CAAAGCTTCC ATCTTCCAAC 
    ACAACAGATC CAGAGACTCT ATTCAAGCTC TCATTGAAAG TAATCATCGA 
    TGAGCTTGAT TCGATTTCCG ATTTACCGGA GAAGCTATCG AAAGAGACTG 
    AAGACGAAAG AATCAAATCT GCGTTAAGGG TTTGTGGAGA TCTGATCGAA 
    GATGCTTTAG ATCGACTCAA CGACACTGTT TCCGCCATTG ATGACGAAGA 
    AAAGAAGAAA ACTTTGTCAT CTTCCAAAAT CGAAGATCTC AAAACTTGGC 
    TAAGCGCAAC GGTAACAGAT CACGAGACGT GTTTCGATTC GTTAGATGAG 
    TTGAAACAGA ACAAAACAGA GTATGCGAAC TCGACGATTA CTCAGAATCT 
    GAAATCGGCA ATGAGTAGAT CAACGGAGTT CACAAGTAAC AGTCTTGCAA 
    TAGTATCGAA GATTCTTTCT GCGTTAAGCG ATTTGGGGAT TCCGATACAC 
    AGGAGAAGAA GACTGATGAG TCATCATCAT CAGCAAAGTG TGGATTTTGA 
    GAAATGGGCA CGACGGAGGT TGTTGCAAAC GGCAGGTTTA AAGCCTGATG 
    TGACGGTGGC GGGTGATGGA ACCGGTGATG TGTTGACTGT GAATGAAGCG 
    GTGGCTAAGG TGCCGAAGAA GAGTTTGAAG ATGTTTGTGA TTTATGTGAA 
    GAGTGGAACT TATGTTGAGA ATGTTGTGAT GGATAAGAGT AAATGGAACG 
    TTATGATTTA CGGTGACGGC AAAGGGAAGA CCATTATTTC CGGCAGCAAG 
    AACTTCGTCG ACGGGACTCC TACTTACGAA ACGGCGACGT TTGCTATACA 
    AGGCAAAGGA TTTATAATGA AGGATATTGG AATCATAAAC ACCGCGGGAG 
    CAGCAAAACA CCAAGCTGTG GCATTCCGAT CAGGCTCTGA TTTCTCAGTC 
    TATTACCAAT GCTCATTCGA TGGTTTTCAA GACACTCTTT ACCCTCACTC 
    CAACCGCCAA TTCTACCGTG ACTGCGACGT TACTGGGACA ATCGACTTCA 
    TTTTCGGAAG TGCTGCGGTC GTTTTCCAAG GCTGCAAAAT CATGCCTCGC 
    CAGCCTCTTT CTAACCAATT CAACACCATA ACCGCTCAGG GCAAAAAAGA 
    TCCGAACCAA AGCTCGGGGA TGTCGATTCA ACGATGCACT ATCTCCGCAA 
    ACGGCAATGT GATTGCTCCC ACGTATCTTG GCCGGCCGTG GAAGGAGTTT 
    TCCACGACGG TTATTATGGA GACGGTGATT GGAGCAGTGG TTCGACCGTC 
    CGGGTGGATG TCATGGGTTT CTGGAGTTGA TCCACCAGCA AGTATTGTCT 
    ACGGAGAGTA TAAGAATACG GGCCCGGGTT CAGATGTAAC GCAGAGAGTT 
    AAATGGGCTG GATATAAACC GGTTATGTCG GACGCCGAGG CTGCGAAGTT 
    TACAGTGGCT ACGCTTTTAC ACGGAGCTGA TTGGATACCG GCAACAGGAG 
    TGATCAATCA GCTATCTTAA TATAGTGACA ATACAATTGG ATTCGTAGCT 
    TGTTTTTGAA AACATCCGGT TGTGATCTAC TTTATATTTG TTTGACACTT 
    ATGCATGATC TGTAATTTTT TCCAACATAG TTGTATTTTG TGTATCCCCT 
    AATACGATAT CTTCTTGATG AAAAAAA

    Gene models with high sequence identity

    1. AT1G53840.1 [+] show detail - pectin methylesterase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pectinesterase, catalytic 8.2e-131
    HMMPfam Pectinesterase inhibitor 1.7e-31
    HMMSmart Pectinesterase inhibitor 1.6e-43
    superfamily Pectin lyase fold/virulence factor 3.2e-101
    superfamily Pectinesterase inhibitor 6.5e-20
    PatternScan Pectinesterase, active site 0
    PatternScan Pectinesterase, active site 0
    Gene3D Pectinesterase inhibitor 5.4e-15
    Gene3D Pectin lyase fold 2e-110
    HMMTigr Pectinesterase inhibitor 2.2e-20
    Coil coiled-coil 0

    See the detailed result >

    AT1G53840.1

    Model type
    Protein coding
    Short Description
    pectin methylesterase 1
    Curator Summary
    encodes a pectin methylesterase
    Computational Description
    pectin methylesterase 1 (PME1); FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: extracellular region, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT3G14300.1); Has 3031 Blast hits to 2961 proteins in 324 species: Archae - 8; Bacteria - 582; Metazoa - 1; Fungi - 194; Plants - 2221; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR