F01648

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01648

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01648

Determination of introduced cDNA(s)

  • RAFL06-83-A22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-83-A22 - Resource: pda03842

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-83-A22 - full reading 
    GAGACTCTAT TTACTCGCCG GCGGAAGAAC AAAATGGCGG GAAGAGCGAT 
    TTTCTCTGTA TCTTGTTCAT CTACTCCTTC CTTGTGTATC CCTTATTCAA 
    CTGCTTCGTT TTCATCGATG AATCGACTGG CGCTCCCCGC CGTCCGGATT 
    TCTCCCCGAA CCAACAGATT TCCCAGGATT CACTGCTCTA TGTCTGCTAA 
    CGACATCAAA GCGGGAACCA ATATCGAAGT CGATGGTGCT CCTTGGCGTG 
    TTCTTGAGTT TCTTCATGTT AAACCAGGAA AAGGTGCGGC ATTTGTGAGA 
    ACTAAGATCA GGAACTATGT GAATGGTAGC ACAGTCGAGA GAACATTTCG 
    TGCTGGAATT TCTGTTGAGG AAGCTAATAT ATATAAAGAA ACCAAACAAT 
    TCACATACAA AGATGGGTCT CAGTTTGTTT TCATGGATTT GACCACATAC 
    GAAGAAACAC GTCTTAACGA ATCTGATATG GGTGAGAAGA CGAAATGGTT 
    GAAAGAAGGA ATGGATTGCA TTTTGCTCTA TTGGAAAGAC AAGGTTATCG 
    ATTTCGATCT ACCGATTACA GTTAAGCTAA AAGTGGTTGA CGTTGATCCT 
    GGCCTTCGCG GTGATACTGT GCAAGGTGGA TCAAAACCGG CGACAATGGA 
    AACGGGTGCA ATAGTTGCTG TACCACTCTT TATTAACGTC GGTGAAGAGA 
    TATTTGTGGA CACAAGAACT GGTGCATACA TGAACCGAGC GTGATCCGGG 
    TCTACTACAC CTAGTTAATT GGGTCGTTAA CAACAAGGCA ATGATACATC 
    TTTTTTGTAT ATGAGAATGT TCGAATCCGG GGACACATGT TTGTTTTTCT 
    GAACATCGAG AGACAATTTT TCGATTAAAT AAATTTATAT ACAAAAAAAA 
    AAAAAAAA

    Gene models with high sequence identity

    1. AT3G08740.1 [+] show detail - elongation factor P (EF-P) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Translation elongation factor P/YeiP, conserved site 0
    HMMPfam Translation elongation factor, KOW-like 1.7e-25
    HMMPfam Elongation factor P, C-terminal 5.4e-24
    HMMPfam Translation elongation factor P/YeiP, central 4.6e-19
    HMMTigr Translation elongation factor P 1e-94
    Gene3D Translation protein SH3-like, subgroup 5.1e-18
    Gene3D Nucleic acid-binding, OB-fold 1.8e-14
    Gene3D Nucleic acid-binding, OB-fold 2.6e-17
    HAMAP Translation elongation factor P 34.782
    superfamily Nucleic acid-binding, OB-fold-like 2.4e-20
    superfamily Translation protein SH3-like 9.2e-20
    superfamily Nucleic acid-binding, OB-fold-like 1.5e-17
    HMMSmart Elongation factor P, C-terminal 2.3e-29

    See the detailed result >

    AT3G08740.1

    Model type
    Protein coding
    Short Description
    elongation factor P (EF-P) family protein
    Computational Description
    elongation factor P (EF-P) family protein; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor P (InterPro:IPR011768), Translation elongation factor P/YeiP, conserved site (InterPro:IPR013852), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, KOW-like (InterPro:IPR013185), Translation protein SH3-like, subgroup (InterPro:IPR014722), Elongation factor P, C-terminal (InterPro:IPR015365), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Translation elongation factor P/YeiP, central (InterPro:IPR001059), Translation elongation factor P/YeiP (InterPro:IPR020599); BEST Arabidopsis thaliana protein match is: elongation factor P (EF-P) family protein (TAIR:AT4G26310.1); Has 10499 Blast hits to 10498 proteins in 2700 species: Archae - 4; Bacteria - 7892; Metazoa - 1; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2521 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR