F01720

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01720

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01720

Determination of introduced cDNA(s)

  • RAFL09-84-B03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-84-B03 - Resource: pda08915

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-84-B03 - full reading 
    GTTCTCAGTT TGAGAGAAAC AAAACCTTCC AATACAACCA GAGAGTCGAC 
    GAAGAAGAAA GAAACCATGT CCCAACATCT TCTTCTTCTC ATTCTCCTCT 
    CGCTACTTCT TCTTCATAAA CCCATTTCCG CCACTACAAT TATTCAAAAA 
    TTCAAAGAAG CCCCACAGTT TTACAATTCT GCAGATTGCC CCTTAATCGA 
    TGACTCCGAG TCCGACGATG ACGTGGTCGC CAAACCAATC TTCTGCTCAC 
    GTCGAGCTGT CCACGTGGCG ATGACACTCG ACACCGCCTA CATTCGTGGC 
    TCAGTCGCCG CTGTTCTCTC CGTCCTCCAA CACTCTTCTT GTCCTGAAAA 
    CATTGTTTTC CACTTCGTCG CCTCTGCTTC CGCCGACGCT TCTTCCTTAC 
    GAGCCACCAT ATCCTCCTCT TTCCCTTACC TTGATTTCAC CGTCTACGTC 
    TTCAACGTCT CCTCCGTCTC TCGCCTTATC TCCTCCTCTA TCCGCTCCGC 
    ACTAGACTGT CCTTTAAACT ACGCAAGAAG CTACCTCGCC GATCTCCTCC 
    CTCCCTGCGT CCGCCGCGTC GTCTACCTAG ACTCCGATCT GATCCTCGTC 
    GACGACATAG CAAAACTCGC CGCCACAGAT CTCGGCCGTG ATTCAGTCCT 
    CGCCGCGCCG GAATACTGCA ACGCCAATTT CACTTCATAC TTCACATCAA 
    CCTTCTGGTC TAATCCGACT CTCTCTTTAA CCTTCGCCGA TCGGAAAGCA 
    TGCTACTTCA ACACTGGAGT CATGGTGATC GATCTTTCCC GGTGGCGCGA 
    AGGCGCGTAC ACGTCACGCA TCGAAGAGTG GATGGCGATG CAAAAGAGAA 
    TGAGAATTTA CGAGCTTGGT TCGTTACCAC CGTTTTTATT GGTTTTTGCC 
    GGTTTGATTA AACCGGTTAA TCATCGGTGG AACCAACACG GTTTAGGAGG 
    TGATAATTTC AGAGGACTGT GTAGAGATCT CCATCCTGGT CCGGTGAGTC 
    TGTTGCATTG GAGTGGGAAA GGTAAGCCAT GGGCTAGGCT TGATGCTGGT 
    CGGCCTTGTC CTTTAGACGC GCTTTGGGCT CCGTATGATC TTCTTCAAAC 
    GCCGTTCGCG TTGGATTCTT GACCAGTCTC GATCGGTTTA CTTATTATTA 
    ATACCGGTAC ATACATATAT ACAATATACA GGTGAATTTT TGTTTTTACT 
    GTACATCGAT TCGTAAATCA TACAACC

    Gene models with high sequence identity

    1. AT1G19300.1 [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.8e-61
    superfamily Nucleotide-diphospho-sugar transferases 5.5e-58
    HMMPfam Glycosyl transferase, family 8 1.3e-59

    See the detailed result >

    AT1G19300.1

    Model type
    Protein coding
    Short Description
    Nucleotide-diphospho-sugar transferases superfamily protein
    Curator Summary
    The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls.
    Computational Description
    PARVUS (PARVUS); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 2 (TAIR:AT3G50760.1); Has 1825 Blast hits to 1814 proteins in 439 species: Archae - 2; Bacteria - 918; Metazoa - 149; Fungi - 0; Plants - 715; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR