F01934

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01934

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01934

Determination of introduced cDNA(s)

  • RAFL06-85-A11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-85-A11 - Resource: pda07737

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-85-A11 - full reading 
    CTTTGACGCG TAATTGTGAT CCTATATATA CATAACACTA CCGCAACTTC 
    AGCAACCTCT AAATCATTCG TCTCCTAAAA TTTTCCAATC TCAAAATCCC 
    AAAAGAACAA AATCGAATGG TGTCAACAAA TCCCCCTGTT CTTCCAATTT 
    CCACCACCGC AACAGACACC ACCAATCAGC CTCCGATTGT AACCGCTGTG 
    GTGGAATCGC AACCTCCAGT CGTCCGTGCA TTTGTCAACG GTGTGACCGA 
    GACGGTCTGT GGTGGTCTAT CTCGTAGCCG TCCGTGGTCA GAGCTCCTCG 
    ATCGATCCGC TTTCACAAAG CCTGACTCTC TCTCCGAGGC CGGGACGCGA 
    TTCCGGAAAA ATTCCTCTTA TTTCAGGGTG AATTACGTTT GCATTGTCGC 
    TCTGATCCTT GGTTTCTCTC TTCTCGCCCA CCCATTCTCT CATCCTCCTC 
    CTATGTCTCG CCGCTTCCTG GCTCTTCCTC TACCTCTTCC GTCCATCAGA 
    TCGTCCTCTT ATCCTCTTCG GCCGATCTTT CTCCGAATAC GAAACTCTCG 
    GTGGCCTAAT CCTCTCCACG ATCGCAGTGA TCTTCTTCAC AAGCGTCGGA 
    TCTGTATTGA TATCCGCTCT CATGATCGGA ATAGCAACAA TCTGTGTCCA 
    TGGCGCCTTT AGAGCTCCCG ATGATCTCTT CCTCGACGAA CAAGATCATG 
    CCGCCTCCGG ATTCCTCTCA TTCATCGGTG TTCCCGCGAT CCCCTCTGTA 
    GCACCCTCTG CCTCCTCAGC GGCTTCCCCC GTGTAAATTA TAGTTCTCAG 
    AATCTGGCGT GTTTAGAGAT TTGAAGGTGG AGATTGTTGC AATGT

    Gene models with high sequence identity

    1. AT5G01640.1 [+] show detail - prenylated RAB acceptor 1.B5
      E-value: 0; Score: 99.76

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Prenylated rab acceptor PRA1 1.3e-26
    HMMPfam Prenylated rab acceptor PRA1 2.4e-20
    HMMPanther PRENYLATED RAB ACCEPTOR 1-RELATED 2.5e-16
    HMMPanther PRENYLATED RAB ACCEPTOR 1-RELATED 8.8e-28

    See the detailed result >

    AT5G01640.1

    Model type
    Protein coding
    Short Description
    prenylated RAB acceptor 1.B5
    Computational Description
    prenylated RAB acceptor 1.B5 (PRA1.B5); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.B4 (TAIR:AT2G38360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR