F02034

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02034

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02034

Determination of introduced cDNA(s)

  • RAFL06-75-B10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-75-B10 - Resource: pda03546

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-75-B10 - full reading
    ATTTTTCCTC GAAATATCTA ATCCACAGAT AGATAGAACA CTCTGTGAGC 
    TTTATCCGCT TCCAATGGCG TCTTCCGCCG CTTCTCCTTC CTTATCTCTA
    CTCTCATTCA CCTCGAAGCC ACCTTATCCC TCCGGCTCTC AGCGGCTATT
    TGCGTCATTC AGAACGGACG GTCTTTTCGC GCCTTTAACA CTGAAATCCC
    GACGCGGCCG TGGTATAGTC GTTAAAGTAG ATGACGTCGA TGCTGATGGA
    GGTGGAGCGG ACGAGTATGA TATGGATGAT GAGGAGGTAG AGGAAGTTGA
    CAACAAGAAG GACTATGATG TCGAGTATGA CCCCTTGGCC GCCGCGATAG
    CCGCTGCAGG CGGTGGTGGT GATGGAGATA TCGCTTTTGT TCAGAGTAAG
    AGTTTTATAT CGACACAAGG ATGGGATTCG GATATGGTGG TTGATTATCG
    GATAAACGAA GATGAGTTTC ATAAACTCAG CTTAATGGAC TGTGATTTCT
    TTATCAGAAA ACCTCCTGAT CCAGATAATG ATGTTTATGA TTTCAGAGAG
    ATGTATGTTA CTCCTCCGGA TACAGATATT TACTCAATTC CGAGAGTTCT
    TGCACCGATG CCTCAAAAGT ATATTCGATG TGCAATGAGT GACTATGGAT
    GTTACAATGT CACTGAACCA CCTATTGATG CCCCCAGAGA TCCACTGTAC
    AAATCTGAGA GGGAGATATC CAAGGTTTTC TTGACAAAAC ATTACCGGAA
    CAGAAGGACA AACGATCCAG AATTTGTGCT AGATCTTGAA GAGATATATG
    TTATTGATTC CAAGACAAAG TCAATCACCA GAGCCAGAGT TCTGGTGACA
    GTTCCGGGAG GAAGAAAAAG GGATAGGAAG GATGACTTGC TTGTGATACG
    AGATAATGGA ACCTCCTTTA AGATCATACA CGTGGGTGAA AGAGATGACC
    CAACAACGGT AATAGAAAGA GAAGAGTGGA CCAAGACTAG AGAAGACATG
    GAGAAACATC TCAGGAAGCT ACGAGACTTC AGTGTCTCAA ATTGGTTCTA
    GAAGAACTCG AGAGACACCA AACGACAAGT CAGCATAACT TTCTTCCTGA
    GATGGAAAAC GAGAGCAGAT GATCTAAATC GATGATATGG TGGAGGGTAT
    ACAATTTTGG TGACCTCAGG TACTGCACTA GCAGCAGAGA TGGATGTGTT
    ATTAGATGAA TATGGGCCTC TAGAAAAAAG TGTGTAGATG CAATAGTTTG
    ATGGACTAAC ATTCAATGAC TAGAGAAGCT AGCTTATTTG CAAGTTTTGA
    GGTGTTTAAT TCAAGTTTTC AATTGATGAT T

    Gene models with high sequence identity

    1. AT1G21600.1 [+] show detail - plastid transcriptionally active 6
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G21600.1

    Model type
    Protein coding
    Short Description
    plastid transcriptionally active 6
    Curator Summary
    Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.
    Computational Description
    plastid transcriptionally active 6 (PTAC6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of transcription, DNA-dependent, transcription from plastid promoter; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR