F02206

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02206

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02206

Determination of introduced cDNA(s)

  • RAFL09-64-K23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-64-K23 - Resource: pda08599

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-64-K23 - full reading 
    GAATCGTTAT CTTTCTCTTC TTTCCTTAAA CCAAAACCCA AAAAAGAGAG 
    ACCAGACAAA AAAAAAAAAA ACTCCCCAAC AAAAAAAAGA TATCTGTCTC 
    TACTAAAAGT CTCTCTATAG CGATGTCATC GGACAACGAA TCGACACCGT 
    CTCAAGCGAC GGTAGAAATG ATGGCGACTT CGCCGGCGAA GATTAAAGAG 
    TATCCAGAAC CATTGGCTTT ACATGAAGTT GTCGTCAAGG ATTCTTCTGT 
    CTTCTGGGAT ACTCTCAGGC GGTTTCACTC AATTATGTCC ACTAAGTTCA 
    TGATTCCTGT GATTGGAGGA AAAGAACTAG ATTTGCATGT TTTGTATGTG 
    GAAGTCACGA GGAGGGGAGG TTACGAAAAG GTAGTCGTAG AGAAAAAATG 
    GAGGGAAGTT GGAGGAGTGT TTAGATTCTC TGCGACAACA ACAAGTGCTT 
    CGTTTGTCTT AAGGAAACAT TATCTCAATC TTCTCTTCCA TTACGAACAA 
    GTTCATCTCT TCACTGCTCG TGGTCCTCTT CTTCATCCCA TAGCTACATT 
    TCATGCAAAT CCCTCAACGA GCAAAGAAAT GGCGCTCGTC GAATATACTC 
    CTCCGAGTAT AAGATATCAT AATACTCATC CTCCTTCTCA AGGTTCGTCG 
    AGTTTCACAG CCATAGGTAC AATAGAAGGC AAATTCGATT GTGGTTATCT 
    GGTAAAAGTT AAGTTGGGCT CAGAGATTCT TAACGGCGTT CTTTATCATT 
    CGGCCCAGCC CGGCCCATCA TCATCTCCAA CCGCTGTTCT AAACAATGCC 
    GTTGTACCTT ATGTTGAAAC TGGGAGGAGA CGGCGTCGTT TAGGTAAAAG 
    ACGAAGAAGC AGACGCAGAG AAGATCCGAA TTACCCGAAA CCGAACCGGA 
    GCGGTTACAA TTTCTTCTTT GCTGAGAAAC ATTGCAAGCT CAAATCACTT 
    TATCCCAACA AGGAGAGAGA GTTTACGAAA CTTATCGGAG AATCGTGGAG 
    CAATCTCTCT ACCGAAGAAC GAATGGTTTA TCAAGACATT GGATTGAAGG 
    ATAAGGAAAG GTATCAGAGG GAGTTGAATG AGTACAGAGA AACGTTGAGA 
    CTTAGGGATG GTGACATGAC AAACGGCAAG GCTTTTTAGG TGATTTAGTT 
    AAAACGGCAA GTCGTTTTGT TGTAGGTCGT TTCTCTCTTT TAAGATTGGA 
    CGCCTCGCCG TTTCTTTTAT TTTCTAGCTT ATTGTAGTTG TCCATGCTTG 
    CTTAACTAGG CTCAGTGAGA GGCTAGACTT GCCAAACTTG AAGAGTCTTT 
    ATTTATTTAA GAATTTTAGA TGTTCTAATG TATTAATCCT TTTTCGTAAA 
    CCTTTCCTGT TAAACAAGAG GTTTATGTTG CATG

    Gene models with high sequence identity

    1. AT1G76110.1 [+] show detail - HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam ARID/BRIGHT DNA-binding domain 9.6e-19
    HMMPfam High mobility group, HMG1/HMG2 1.2e-10
    HMMSmart ARID/BRIGHT DNA-binding domain 4.2e-38
    HMMSmart High mobility group, HMG1/HMG2 1.8e-12
    superfamily ARID/BRIGHT DNA-binding domain 6.3e-27
    superfamily High mobility group, superfamily 1.2e-19
    Gene3D ARID/BRIGHT DNA-binding domain 3.8e-25
    Gene3D High mobility group, HMG1/HMG2 3.1e-16
    ProfileScan High mobility group, HMG1/HMG2 14.018
    ProfileScan ARID/BRIGHT DNA-binding domain 25.699
    HMMPanther SWI/SNF-RELATED CHROMATIN BINDING PROTEIN 1.1e-19

    See the detailed result >

    AT1G76110.1

    Model type
    Protein coding
    Short Description
    HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
    Computational Description
    HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (TAIR:AT1G04880.1); Has 3338 Blast hits to 2805 proteins in 278 species: Archae - 0; Bacteria - 0; Metazoa - 2430; Fungi - 276; Plants - 321; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR