F02702

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02702

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02702

Determination of introduced cDNA(s)

  • RAFL05-13-F06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-13-F06 - Resource: pda02565

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-13-F06 - full reading 
    ACAATAAAAT AATAATTATT AGTATTACGA AGGGAAAAGG GAAATGGTCC 
    GTACTAGTTG TCCGAACCCG AAGAAGCCCC AATCGCTGAT GCAACTGTCT 
    AGGAGCCGCC ACGCTGCGAA GAAGCTCTAG GGTTTGTTCG TCTTCTTCCT 
    CGGTTTCATC AGATGGTAAT CAAGATTGTT GACGGTGCTC TGAAGATCTG 
    TTGACCTGCT CAGAGTTTGC TTAAAAAGTT TGAGAAAAAA TGGACGATGA 
    TAATGGGCTC GAGCTCAGCT TGGGTCTTTC TTGTGGAGGA TCAACAGGAA 
    AAGCTAAGGG TAACAATAAT AATAATGCTG GAAGCTCCTC AGAGAACTAC 
    AGGGCAGAAG GAGGCGATAG AAGTGCTAAA GTGATTGATG ACTTTAAGAA 
    CTTCCTGCAT CCAACTTCTC AAAGACCTGC AGAGCCGAGT TCTGGTTCTC 
    AAAGAAGTGA TTCGGGTCAA CAGCCTCCAC AAAATTTCTT CAATGACCTC 
    TCAAAAGCTC CTACAACTGA GGCTGAAGCT TCTACGAAAC CTTTGTGGGT 
    GGAGGAGGAG TCACGGAAAG AAGCAGGGAA CAAAAGAAAG TTCGGGTTCC 
    CGGGGATGAA TGATGATAAG AAAAAAGAGA AGGACTCGTC TCATGTTGAT 
    ATGCATGAGA AGAAGACAAA AGCATCCCAT GTTTCAACTG CGACAGATGA 
    AGGATCAACA GCTGAAAACG AAGATGTAGC AGAGTCTGAA GTAGGTGGTG 
    GTTCTTCTTC CAACCACGCA AAGGAGGTGG TTCGTCCTCC TACTGATACA 
    AACATTGTGG ACAACTTAAC TGGTCAAAGG AGGAGCAACC ATGGTGGATC 
    TGGCACTGAA GAGTTTACAA TGCGCAACAT GAGTTACACC GTACCTTTCA 
    CAGTTCATCC GCAAAATGTC GTCACTAGTA TGCCTTACTC TTTACCGACA 
    AAAGAGTCTG GACAACACGC AGCAGCTACA AGTCTATTGC AGCCTAATGC 
    TAATGCTGGA AATCTCCCGA TTATGTTCGG ATACTCACCA GTCCAGCTCC 
    CTATGCTAGA TAAGGACGGT TCAGGAGGGA TTGTCGCACT TTCTCAATCT 
    CCATTTGCTG GAAGAGTTCC ATCAAACTCA GCTACTGCAA AAGGCGAAGG 
    CAAACAACCT GTTGCAGAAG AAGGTTCATC CGAGGATGCA TCAGAACGAC 
    CAACGGGAGA CAACAGCAAC CTCAATACCG CTTTCTCTTT CGACTTTTCT 
    GCCATAAAAC CTGGAATGGC AGCAGATGTG AAGTTTGGAG GATCCGGGGC 
    ACGTCCCAAC TTACCGTGGG TCTCAACCAC TGGTTCAGGC CCACACGGAC 
    GGACAATCTC AGGTGTCACA TACCGGTACA ACGCAAACCA GATCAAAATC 
    GTATGCGCTT GCCACGGCTC GCACATGTCA CCGGAGGAGT TTGTACGGCA 
    CGCAAGCGAG GAGTACGTTA GCCCAGAATC ATCCATGGGA ATGACTGCAG 
    CGTCAGCTCA CACCTGAAAA GTCACCACCG GAAAAAAACA TGTCTGAAAT 
    CTTGTAAACA AATGGAAGGG TTTGTAATGA GTTTCTTTTT GGAACATACA 
    TTTTATTATG TTTAGTCGGA TCAAACTCTC AAGCCAAAGT TTTTTAACTG 
    AGCTTTCTGT TATGTTGTTG TAATCTCTCT ACTTCATCAC AATTCCTTAT 
    GTAATCCTCT TCTTTCCTTT TTGTTTTTTG GTTGAAAGGA AATTATATAT 
    AAC

    Gene models with high sequence identity

    1. AT4G28910.1 [+] show detail - novel interactor of JAZ
      E-value: 0; Score: 99.83

     

    InterPro Scan Digest

    See the detailed result >

    AT4G28910.1

    Model type
    Protein coding
    Short Description
    novel interactor of JAZ
    Computational Description
    novel interactor of JAZ (NINJA); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: ABI five binding protein 3 (TAIR:AT3G29575.4); Has 317 Blast hits to 301 proteins in 73 species: Archae - 2; Bacteria - 15; Metazoa - 43; Fungi - 39; Plants - 175; Viruses - 3; Other Eukaryotes - 40 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR