F03141

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03141

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03141

Determination of introduced cDNA(s)

  • RAFL05-04-J20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-04-J20 - Resource: pda07246

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-04-J20 - full reading 
    ATATCCAACA ACAAAAACAT AAGCTAAGAA AACGAAACTC AACTAATTTT 
    GTTATCACCC AAAAAGAAGT TCAAACACAA TGGCTTTCGC TTTGAGGTTC 
    TTCACATGCC TTGTTTTAAC GGTGTGCATA GTTGCATCAG TCGATGCTGC 
    AATCTCATGT GGCACAGTGG CAGGTAGCTT GGCTCCATGT GCAACCTATC 
    TATCAAAAGG TGGGTTGGTG CCACCTTCAT GTTGTGCAGG AGTCAAAACT 
    TTGAACAGTA TGGCTAAAAC CACACCAGAC CGCCAACAAG CTTGCAGATG 
    CATCCAGTCC ACTGCGAAGA GCATTTCTGG TCTCAACCCA AGTCTAGCCT 
    CTGGCCTTCC TGGAAAGTGC GGTGTTAGCA TTCCATATCC AATCTCCATG 
    AGCACTAACT GCAACAACAT CAAGTGAAAT GGAAGCTTAC GTCGTCGTTT 
    TGGCGTTAAG AGTATGGTTT ACCAGAAGTA CTAGAATAAA ATACGGCTAT 
    ATATCTTAGC TGATATTACC ATGTATTTGT TTTTGTCTCA ATGCTTTGTC 
    TTATTTTCAT ATCATATGTT GTATTGATGT GCTAAAACTA TGATAATAGT 
    ACCTTATTAG CC

    Gene models with high sequence identity

    1. AT5G59320.1 [+] show detail - lipid transfer protein 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 7.4e-15
    HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 6.9e-09
    FPrintScan Plant lipid transfer protein/Par allergen 1.6e-28
    FPrintScan Plant lipid transfer protein/Par allergen 1.6e-28
    FPrintScan Plant lipid transfer protein/Par allergen 1.6e-28
    FPrintScan Plant lipid transfer protein/Par allergen 1.6e-28
    FPrintScan Plant lipid transfer protein/Par allergen 1.6e-28
    Gene3D Plant lipid transfer protein/hydrophobic protein, helical domain 1.1e-32
    PatternScan Plant lipid transfer protein/Par allergen 0
    superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 8.3e-33

    See the detailed result >

    AT5G59320.1

    Model type
    Protein coding
    Short Description
    lipid transfer protein 3
    Curator Summary
    Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
    Computational Description
    lipid transfer protein 3 (LTP3); FUNCTIONS IN: lipid binding; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus; LOCATED IN: cell wall, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 4 (TAIR:AT5G59310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR