F03223

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03223

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03223

Determination of introduced cDNA(s)

  • RAFL07-12-F11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-12-F11 - Resource: pda17308

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-12-F11 - full reading 
    GATATACCAC ACAGTCACAC ATTCTTTATA ATGTAAATCA AAAGAGAACT 
    AAACCAAGAA ACAAAATGGG ATACGAAAGG CTCGGACCAT CCGGAGCAAC 
    TGGTTCGGTC ACCACCTCCA CTACTACAGC TCCAATCCTT AACCAAGTCT 
    CCACGTCAGA GCAACCGGAG AACAACAACC GAAGAAGCAA AAAGAAGCTT 
    GTCGTATCAT CAATCGTCTT AGCCATCTCA CTTATCCTCG CCGCCGCGAT 
    CTTCGCCGGA GTCAGATCAC GTCTCAAGTT AAACCAATCA GTCCCAGGCC 
    TAGCTCGTAA ACCGAGTCAA GCAATCTCTA AAGCTTGTGA GTTAACTCGT 
    TTCCCCGAGT TATGCGTTGA CTCACTCATG GACTTTCCCG GCTCACTCGC 
    CGCTTCCTCC TCTAAAGATC TCATCCACGT GACTGTGAAC ATGACGCTCC 
    ACCACTTCAG CCACGCTCTC TACTCCTCTG CTTCCCTCTC CTTCGTCGAC 
    ATGCCGCCAC GTGCTCGCTC AGCTTACGAC TCTTGCGTCG AGCTACTTGA 
    CGATTCCGTT GACGCGCTAT CACGCGCTCT TTCCTCCGTC GTATCCTCCT 
    CCGCTAAGCC GCAAGATGTT ACAACGTGGC TTAGCGCGGC TTTAACAAAC 
    CATGACACGT GTACTGAAGG ATTCGACGGC GTCGACGACG GTGGAGTGAA 
    GGATCATATG ACGGCGGCGT TACAGAATCT TTCTGAGCTT GTTAGTAACT 
    GTCTTGCTAT ATTCTCGGCG AGTCACGACG GTGACGATTT CGCCGGAGTT 
    CCAATACAGA ACAGGAGGCT GCTGGGAGTG GAGGAACGAG AAGAGAAATT 
    CCCGAGATGG ATGAGACCAA AAGAACGCGA GATACTGGAA ATGCCGGTAT 
    CTCAGATACA AGCTGATATT ATCGTATCGA AAGACGGTAA CGGCACGTGC 
    AAAACTATAT CGGAAGCTAT CAAGAAAGCT CCTCAGAACA GTACTCGCCG 
    GATAATTATC TACGTCAAGG CCGGAAGATA TGAAGAGAAC AACCTCAAGG 
    TCGGTAGGAA AAAAATTAAT TTGATGTTCG TTGGAGATGG CAAGGGTAAA 
    ACTGTTATTT CGGGAGGCAA AAGTATATTT GACAACATCA CTACTTTCCA 
    CACGGCGTCA TTTGCTGCGA CCGGAGCTGG ATTTATTGCA AGGGACATCA 
    CATTCGAAAA CTGGGCCGGT CCAGCGAAGC ACCAAGCCGT GGCTCTCCGC 
    ATCGGAGCTG ACCACGCAGT GATCTACCGA TGCAATATAA TCGGTTACCA 
    AGACACACTC TACGTCCATT CAAACCGCCA ATTCTTTCGT GAATGCGATA 
    TCTACGGTAC AGTCGATTTT ATCTTTGGTA ACGCAGCCGT CGTACTACAA 
    AACTGTAGCA TCTACGCACG GAAGCCAATG GATTTTCAGA AAAATACAAT 
    CACGGCTCAA AACAGAAAAG ATCCGAACCA AAACACCGGA ATATCAATAC 
    ATGCGTCTAG GGTTCTTGCA GCATCCGATC TCCAAGCGAC AAACGGTAGT 
    ACACAGACGT ATCTAGGCCG ACCTTGGAAG CTATTCTCTA GGACAGTGTA 
    TATGATGTCG TATATCGGTG GTCATGTACA CACGAGAGGT TGGCTCGAGT 
    GGAACACAAC ATTTGCTTTA GATACTTTGT ATTATGGAGA GTATTTGAAC 
    AGTGGACCTG GGTCGGGTCT CGGGCAACGT GTGAGCTGGC CGGGTTATCG 
    GGTCATCAAT TCGACGGCCG AGGCAAACCG GTTCACTGTG GCAGAATTTA 
    TATACGGTTC CTCGTGGTTG CCATCGACCG GAGTTTCGTT CTTGGCCGGA 
    TTAAGCATAT AGGTAGAGAA AAAATTGAAA TGCTTATTTT TCCGATGAAT 
    TGTTTCATTC TTACGGTCCT TATATTAATG GACATATCAG TATTCCAATA 
    TATATGAGTA TATTTTAACT TTTAATTGTA ATGTCTCCAC TCTCCAGAGG 
    TATTATTTAA TAATAGATGA ACACTCGAGG ATATAAAAAA AAAA

    Gene models with high sequence identity

    1. AT3G49220.1 [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Pectinesterase inhibitor 4.4e-45
    HMMPfam Pectinesterase, catalytic 4.6e-141
    HMMPfam Pectinesterase inhibitor 2.9e-33
    PatternScan Pectinesterase, active site 0
    HMMTigr Pectinesterase inhibitor 5.7e-35
    superfamily Pectin lyase fold/virulence factor 1.6e-110
    superfamily Pectinesterase inhibitor 2.4e-25
    Gene3D Pectinesterase inhibitor 9.8e-27
    Gene3D Pectin lyase fold 1.3e-119

    See the detailed result >

    AT3G49220.1

    Model type
    Protein coding
    Short Description
    Plant invertase/pectin methylesterase inhibitor superfamily
    Computational Description
    Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase PCR fragment F (TAIR:AT5G53370.1); Has 3279 Blast hits to 3212 proteins in 470 species: Archae - 6; Bacteria - 866; Metazoa - 1; Fungi - 193; Plants - 2188; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR