F03441

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03441

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03441

Determination of introduced cDNA(s)

  • RAFL05-21-N06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-21-N06 - Resource: pda01407

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-21-N06 - full reading 
    AGAGATCATC GTCGTCGTCG TTCAGAAACC TTCAAAAATG GCTGGAAAAC 
    TCATGCACGC TCTTCAGTAC AACTCTTACG GTGGTGGCGC CGCCGGATTA 
    GAGCATGTTC AAGTTCCGGT TCCAACACCA AAGAGTAATG AGGTTTGCCT 
    GAAATTAGAA GCTACTAGTC TAAACCCTGT TGATTGGAAA ATTCAGAAAG 
    GAATGATCCG CCCATTTCTG CCCCGCAAGT TCCCCTGCAT TCCAGCTACT 
    GATGTTGCTG GAGAGGTCGT TGAGGTTGGA TCAGGAGTAA AAAATTTTAA 
    GGCTGGTGAC AAAGTTGTAG CGGTTCTTAG CCATCTAGGT GGAGGTGGAC 
    TTGCTGAGTT CGCTGTTGCA ACCGAGAAGC TGACTGTCAA AAGACCTCAA 
    GAAGTGGGAG CAGCTGAAGC AGCAGCTTTA CCTGTGGCGG GTCTAACCGC 
    TCTCCAAGCT CTTACTAATC CTGCGGGGTT GAAGCTGGAT GGTACAGGCA 
    AGAAGGCGAA CATCCTGGTC ACAGCAGCAT CTGGTGGGGT TGGTCACTAT 
    GCAGTCCAGC TGGCAAAACT TGCAAATGCT CACGTAACCG CTACATGTGG 
    TGCCCGGAAC ATAGAGTTTG TCAAATCGTT GGGAGCGGAT GAGGTTCTCG 
    ACTACAAGAC TCCCGAGGGA GCCGCCCTCA AGAGTCCGTC GGGTAAAAAA 
    TATGACGCTG TGGTCCATTG TGCAAACGGG ATTCCATTTT CGGTATTCGA 
    ACCAAATTTG TCGGAAAACG GGAAGGTGAT AGACATCACA CCGGGGCCTA 
    ATGCAATGTG GACTTATGCG GTTAAGAAAA TAACCATGTC AAAGAAGCAG 
    TTAGTGCCAC TCTTGTTGAT CCCAAAAGCT GAGAATTTGG AGTTTATGGT 
    GAATCTAGTG AAAGAAGGGA AAGTGAAGAC AGTGATTGAC TCAAAGCATC 
    CTTTGAGCAA AGCGGAGGAT GCTTGGGCCA AAAGTATCGA TGGTCATGCT 
    ACTGGGAAGA TCATTGTCGA GCCATAAGAG CGTTGTAGCC ATCTTTGACT 
    GTCTGTGAAT GTGATAATAG ATGTTAAAAG TTTGCGTACC GTTTACAGAA 
    TGTTTTATGT TGTTTTGTTT AATATACCCG AGTATGTCGA AAGTTACATG 
    AAAAGAAAAT TTGGATGAAA TAAATAATAC TTGTTAAAAA AAAAAAAAAA 
    A

    Gene models with high sequence identity

    1. AT4G13010.1 [+] show detail - Oxidoreductase, zinc-binding dehydrogenase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily GroES-like 3.7e-38
    superfamily NAD(P)-binding domain 3.4e-30
    HMMPfam Alcohol dehydrogenase, zinc-binding 1.1e-11
    HMMPfam Alcohol dehydrogenase GroES-like 8.6e-10
    Gene3D no description 7.2e-36
    HMMPanther ALCOHOL DEHYDROGENASE, ZINC-CONTAINING 4.1e-113
    HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 4.1e-113
    HMMSmart Polyketide synthase, enoylreductase 1.9e-11

    See the detailed result >

    AT4G13010.1

    Model type
    Protein coding
    Short Description
    Oxidoreductase, zinc-binding dehydrogenase family protein
    Computational Description
    Oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT1G23740.1); Has 34133 Blast hits to 33976 proteins in 2527 species: Archae - 549; Bacteria - 21108; Metazoa - 1143; Fungi - 3531; Plants - 1393; Viruses - 3; Other Eukaryotes - 6406 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR