F03810

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03810

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03810

Determination of introduced cDNA(s)

  • RAFL02-08-B13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-08-B13 - Resource: pda00111

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-08-B13 - full reading 
    CTAGATCTAA CCCCAGCCGT CAGATCAGAT TGATCGGGCA ATCGCTTCTA 
    GACCGTTGGA ATCAAGCAAT GGTAGAGGTA GAATCGTATT TGTGGGTATC 
    TAGAAGAGGC GTTAGGATTG TCTCCAAGCT GGGTGTTTTT TCATCTTGAT 
    GGCCAACTAA TCGAATCTCC TACTCTAAAG ATATTTTTGT TTATTTCTGT 
    CATGTGTGAT TTGGTCGCGC GTACGGGTCG TCTCCAGCAG CGGTACGAGG 
    ATGGCTCTCG TCTCGTCGCC GGGTGTATTC CGTTTAGGTA TGTAAATTCT 
    GACAAAGATG GTAATTCTGA ATCTGGGAAA GTGATTCAAG TGTTGATGAT 
    CAGCTCGTCT AGTGGACCTG GACTTTTGTT TCCCAAGGGA GGATGGGAGA 
    ATGATGAGAC AGTCAGGGAG GCTGCAGCGA GGGAAGCAGT GGAAGAAGCA 
    GGAGTCCGTG GGATTCTTAT GGATTTTTTG GGGAATTATG AGTTCAAGAG 
    CAAATCACAC CAAGATGAGT TTAGCCCAGA AGGTTTATGT AAAGCGGCAA 
    TGTACGCGTT GTATGTGAAA GAAGAGCTAG CGACGTGGCC GGAACATGAG 
    ACGAGAACAC GTAAATGGCT GACAATTGAA GAAGCGGTAG AGAGTTGCAG 
    GCACCCTTGG ATGAAGGACG CATTGGTGGA AGGATTCTGT AAATGGCATA 
    AGGAGAAGAT GGTTAAAGGA GAGGAGATAA CTGGTGAACA TTGAAGCAAA 
    TGTGCATAAA CCTCTGAGCG TTGGTTTCAT TCCTTTCGAT TTTGTTTTTA 
    CCTTTTTGTT TTTGTTTTTG AAGTCTTATG CATGGATAAT CTCTTGTGAC 
    TGCGAAACGT AATAGTTTCG AAGATTTAAA GTTCAATTAT TGCCCTATTT 
    TCAC

    Gene models with high sequence identity

    1. AT3G12600.1 [+] show detail - nudix hydrolase homolog 16
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NUDIX hydrolase domain 1.5e-13
    superfamily NUDIX hydrolase domain-like 2.7e-22
    PatternScan NUDIX hydrolase, conserved site 0
    HMMPanther DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROL 5.2e-20
    Gene3D NUDIX hydrolase domain 1.9e-14

    See the detailed result >

    AT3G12600.1

    Model type
    Protein coding
    Short Description
    nudix hydrolase homolog 16
    Computational Description
    nudix hydrolase homolog 16 (NUDT16); FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 12 (TAIR:AT1G12880.1); Has 1169 Blast hits to 1168 proteins in 345 species: Archae - 0; Bacteria - 470; Metazoa - 236; Fungi - 123; Plants - 235; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR