F04042

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F04042

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F04042

Determination of introduced cDNA(s)

  • RAFL09-22-H01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-22-H01 - Resource: pda09673

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-22-H01 - full reading 
    AAAAGAACCA AAACAAAAAA AAAGTTGACA TGGACCAAAA AAGCTTTTTC 
    CGGTTGATTT TTCTCATAGT CACAGCTGGT TTCATCATCT CCTTCACTTC 
    CACTAACTTC CCTCACGCGC CGACGAGGCT TCTTGATTGC ACCGACTCTT 
    CTTCTTCACC TCTTTGCGCT TCGAGAAACT TTCTTTTCAA CAAACAACAA 
    CCACGACCTA TTCCTAAACA TGATCCTAAA CCAAATACCA AAAACCATGA 
    TCACGTGTCC GATACACCAA ACCATCCTCT AGACCCACTC ACGGTGTCGG 
    AGATTAACAA AATCCGATCA ATACTCTCTT CTCACGCGCT ATTCACTTCC 
    GGTACACCAC ACGCGCTCCA CACCGTCGTT CTTGAAGAGC CTGAGAAGAA 
    TCTTGTCCGT CACTGGGAAA AAGGGAACCC ACTTCCTCCG AGGAAAGCTT 
    CCGTCATCGC ACGTGTTGGC GCGGACACGC ACGTGCTCAC CGTTGATATC 
    TCTACGGGTC GGGTAGATTC AGAGAATAGC CCGGTTCGTG TTTCTGGTTA 
    CCCGATGATG ACTATAGAAG AGATGAACGA TATCACTGTT GTACCATTTT 
    CAAACGCGGA TTTCAACCGT ACGATCATCT CTCGTGGAGT TAATCTAACG 
    GACGTGATTT GTTTCCCAAT CTCTTGTGGT TGGTTTGGTA ATAAAGAAGA 
    AAACGCGAGG GTAATTAAAA GTCAGTGTTT CATGACACAA GGAACACCTA 
    ACTTCTACAT GCGTCCTATC GAAGGTTTAA CCATTCTCAT CGATTTAGAT 
    ACAAAGCAAG TGATCGAGAT AACCGATACA GGTCGGGCTA TACCCATACC 
    CGGTTCAACC AATACCGATT ACCGCTTCCA AAAGCTCGCA ACCACCGACA 
    AAACTCGGCC TCTAAACCCG ATATCCATTG AGCAGCCACG TGGTCCAAGC 
    TTCGTGATAG AGGACAACCA TCTAGTGAAA TGGGCAAATT GGGAATTTCA 
    TCTAAAACCT GACCCGAGAG CAGGTGTGGT AATATCACGG GTAAGAGTAC 
    ACGACCCGGA TACTCATGAG ACACGTGACG TGATGTACAA AGGTTTCGTG 
    TCTGAACTTT TTGTTCCGTA CATGGATCCA TCGGACGCGT GGTACTTTAA 
    GACTTACATG GACGCAGGGG AATACGGGTT CGGGTTACAA GCCATGCCAC 
    TCGTACCGCT TAATGATTGT CCACGAAACG CAGCCTATAT GGACGGAGTT 
    TTCGCCGCAG CCGATGGAAC ACCGTTCGTG AGAGAAAACA TGGTTTGTAT 
    CTTTGAGAGT TACGCCGGAG ATATTGGGTG GCGTCACTCC GAAAGCCCCA 
    TCACCGGTAT ACCGATAAGG GAAGTGAGAC CAAAAGTGAC GCTAGTGGTA 
    CGAATGGCAG CTTCGGTAGG TAACTATGAT TACATCATTG ATTACGAGTT 
    CCAAACTGAT GGGCTTATAA AAGCTAAGGT CGGGCTAAGT GGAATACTAA 
    TGGTGAAAGG GACAACATAT CAAAACAAAA ACCAAGTGGA GAAAGATAAA 
    GACGGTAATG AAGAAGAGCT TCACGGCACG CTTCTGTCTG AAAATGTAAT 
    TGGAGTAATA CACGATCACT ACGTCACTTT TTACCTTGAC CTTGACGTCG 
    ATGGCCCGGA CAACTCATTT GTTAAAGTGA ATCTCAAGAG GCAAGAGACC 
    GAGCCAGGCG AGTCACCGAG GAAAAGTTAC CTAAAAGCTG TTAGGAACAT 
    TGCGAAAACC GAAAAGGATG GTCAGATCAA GCTTAGCTTG TACGATCCAT 
    CAGAATTCCA CGTCATCAAC TCTGGTAAAA CCACTCGGGT CGGAAACCCG 
    ACGGGTTATA AGGTCGTTCC TAGAACGACG GCAGCTAGTC TACTTGACCA 
    TGATGATCCG CCGCAGAAGA GAGGAGCTTT TACCAACAAC CAAATTTGGG 
    TCACTCCGTA CAATAAGTCG GAGCAATGGG CTGGTGGCTT GTTCACTTAC 
    CAAAGCCATG GTGATGACAC TCTTGCAGTT TGGTCAGACA GGGATAGAGA 
    CATAGAGAAC AAGGATATAG TTGTGTGGTA TACACTTGGT TTCCATCACA 
    TTCCATGTCA AGAAGATTTT CCGATAATGC CCACGGTTTC TTCGAGTTTC 
    GATTTGAAGC CCGTAAACTT TTTCGAGCGC AATCCAATCC TCAGTGCCGC 
    TCCAAACTTT GAACATGATC TCCCGGTTTG TGGAGTTCAA TCTGTTTCTG 
    CTTGAGAAGA GTAAAGTACG AAATAAAGAA ATAGCAACTT TTGTATATTT 
    GTGTTACTCT CAAGGTACAC AATGTAATTT GTGGCCTTAA AACTGGTAAT 
    TAGATGTATA AATGTAAATG CTAATGTATA TGTGTTTAAA CGAGAATCCA 
    TATATTCATG CGGATTATGG

    Gene models with high sequence identity

    1. AT4G12290.1 [+] show detail - Copper amine oxidase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther COPPER AMINE OXIDASE 0
    HMMPanther Copper amine oxidase 0
    superfamily Copper amine oxidase, C-terminal 1.3e-150
    superfamily Copper amine oxidase, N-terminal 1.3e-37
    superfamily Copper amine oxidase, N-terminal 6.2e-21
    Gene3D Copper amine oxidase, N2/N3-terminal 4.2e-24
    Gene3D Copper amine oxidase, N2/N3-terminal 9.2e-32
    Gene3D Copper amine oxidase, C-terminal 2.8e-144
    PatternScan Copper amine oxidase 0
    PatternScan Copper amine oxidase 0
    HMMPfam Copper amine oxidase, C-terminal 9.6e-152
    HMMPfam Copper amine oxidase, N3-terminal 1.9e-33
    HMMPfam Copper amine oxidase, N2-terminal 7e-30

    See the detailed result >

    AT4G12290.1

    Model type
    Protein coding
    Short Description
    Copper amine oxidase family protein
    Computational Description
    Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G62810.1); Has 1550 Blast hits to 1547 proteins in 275 species: Archae - 14; Bacteria - 376; Metazoa - 251; Fungi - 449; Plants - 243; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR