F04530

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F04530

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F04530

Determination of introduced cDNA(s)

  • RAFL05-11-B16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-11-B16 - Resource: pda01291

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-11-B16 - full reading 
    ATCGCTCGGT GAATTCGAGG ATCCTCGAGC TTTTTGATCG GAGACTTTTT 
    CTCTCATCGT CGTTGTTTGA ATTCTCCGGC TGAGAGATGC TTGCTTGACG 
    ACGAATCTCC ACCGATCTTT TACCTTTTCG CACAACAAGT AAGAGAAGGA 
    TGTCGACTCC AGCGAGGAAG AGATTGATGA GGGATTTCAA GAGGTTGCAG 
    CAAGACCCAC CTGCAGGAAT TAGTGGTGCT CCACAAGACA ACAATATCAT 
    GTTGTGGAAT GCTGTTATAT TCGGGCCTGA TGATACCCCT TGGGATGGAG 
    GTACTTTCAA ATTGTCACTG CAGTTTTCGG AAGATTATCC AAATAAACCA 
    CCAACAGTGC GGTTTGTTTC ACGGATGTTC CATCCAAACA TTTATGCTGA 
    TGGGAGTATA TGCTTGGACA TTCTCCAAAA CCAATGGAGT CCAATATACG 
    ATGTCGCTGC TATACTAACC TCCATTCAGT CATTGCTATG TGATCCTAAT 
    CCGAATTCTC CTGCAAATTC GGAAGCTGCA CGAATGTTCA GTGAAAGCAA 
    GCGCGAGTAC AACAGAAGAG TCCGCGAGGT TGTCGAACAA AGCTGGACTG 
    CCGACTAGTA ATTATATCAT TGTAGCATTT GTCTTCAAAT AACATTAAAC 
    CTCCTCTCTT GTATCTGATT TCGACCATCA CATCTCTGAG AGAAGTTTAC 
    TCTCCCTACC ACTCTCTTTT ATGTCTTTCT GTGTTTTTCA AACTCTGTGA 
    TTTGTTGCTC TTCATGTTTT TTTTCTTTGT ATTTTCGTAA CCACATTCAT 
    CTTCATAATT ATCATATGTA TTTCAGTCGT

    Gene models with high sequence identity

    1. AT2G02760.1 [+] show detail - ubiquiting-conjugating enzyme 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Ubiquitin-conjugating enzyme, E2 5e-67
    superfamily Ubiquitin-conjugating enzyme/RWD-like 4.4e-64
    HMMPanther UBIQUITIN-CONJUGATING ENZYME RAD6 1.1e-115
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 1.1e-115
    ProfileScan Ubiquitin-conjugating enzyme, E2 47.009
    PatternScan Ubiquitin-conjugating enzyme, E2 0
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 2.1e-56
    HMMPfam Ubiquitin-conjugating enzyme, E2 4.7e-52

    See the detailed result >

    AT2G02760.1

    Model type
    Protein coding
    Short Description
    ubiquiting-conjugating enzyme 2
    Curator Summary
    ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene.
    Computational Description
    ubiquiting-conjugating enzyme 2 (UBC2); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin carrier protein 1 (TAIR:AT1G14400.2); Has 10642 Blast hits to 10588 proteins in 402 species: Archae - 0; Bacteria - 2; Metazoa - 4556; Fungi - 2331; Plants - 2015; Viruses - 26; Other Eukaryotes - 1712 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR