F04835

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F04835

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F04835

Determination of introduced cDNA(s)

  • RAFL09-68-C24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-68-C24 - Resource: pda06609

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-68-C24 - full reading 
    AGTCAGATAT AAATTAGGGT TTCAGATTTT TTAGATTTTA TCTCTTCAAT 
    TCGAGCCAGT GAATTGCCGC CTCCTCCTCC TCCTCTTCTT CCCTCAATAC 
    ATAACCAAAG CAATGAAATT CTACTTGTAT CCTGTAATGG CTGACTAAAT 
    CAACTGCGAA TCGTGTTTTG TGACATGGTT ACTGTTGCTA GGCTATTGAA 
    CCTCACTCTT GTTGTTCCCG AGATTGACAA AACATCCTTC TTTGCTGATT 
    CAAGGTTTTG TGTTCTGTCA CCATCTCTTA GACCCCTTCT ACGTTACGCT 
    TTCCTGAGAG AAGTAAAGGT CTGGTTGTGC AGTGAACATG GGGGCTCTTG 
    CTCAAGTTGT TCCGTGGATA CCCGAAGACG ACCTGCTGCT AAAGAATGCT 
    GTCGAGGCTG GTGCTTCTTT GGAATCGCTT GCTAAAGGTG CTGTGCAGTT 
    TTCTAGAAGA TTTTCTATTA GAGAATTGCA AGATCGATGG CATGCACTGC 
    TTTATGATCC AGTAGTTTCT GTAGAGGCGG CTTTTCGGAT GGCTGAGCTT 
    GAACGTACTA ACCCTAATTT TCCTACTAAG TTTGGTAGAA CTGGATATTC 
    AAAAGAAAAC AAAAGTTCAT CTAGGAAGAG GAATGCTGAA AGGCTCAGAA 
    GTACTTATCA TTCCTTGCGG AAGAAATTTA GGACTGAGCC ATTCAATTCC 
    TTGGATCTAG GTTTCCTCGT TCCACCAAAT GATAGCCATT TCATGGATAA 
    TGGTGATGCA ACACATCTTG GTCTTGAGGA CTCTCACATG GATATTATCC 
    ACAACGCGTT TCCAGAAATC TTGGCTGAAG GTGGTTGCGT GACAACTCAT 
    GTTCTGCCAG AAGATAATTT ACAGGGAGAC ATTCCTTACG TAGAAGGAGA 
    AAATCTCACA TTCACTGAAC ACGCAGGTCT ATCAGTATGT GATGTGGTTC 
    ATCAAGATTC CGAGCAGAAA CTAGAGAATA CTGCTCACGA GGCAAAAAAC 
    ACAATGGCTA GCACTGATTT CCTGGCACAG CTTTCAACTT CTCTTTTCGA 
    AGAAGACATG GAACCGTTCA TGGAAGTAGA TGGCAAAGAA GTTGACAAGT 
    CATATTATGA TGGTCTTAGC TCACTGTTGG TGAACTCTAC AAATGATACA 
    AACCGCGAGG CTTTTCCTAA CCCCACCGAG CAAGAACCTT CCATTGCACC 
    AACTCATCCA GGAGAGGCAA CCCTGGATGA TCATGTGATG CTTGAGCTAG 
    ATGGTACAAT CGCTTTAGAT CCTCATCCTG AGATTGTTGG GGGTGTAATC 
    TGCTGTTTAT TAAACGAAGA GGATCCTGAT ATTCCGTGTA ATGATGACAT 
    TTTCCTGTCC AACAACTCCC GTCCGATGTC AGTTTCTTCT TTAGCCCGGC 
    GGAACTTTAA GGATACCAAT AGTCCAATAA CTACATGTGT AAGAGACGTC 
    TCCGCCAGTA AGGAAAAAAG TGAGGGATAT TCACTCCAGG CTCAAAAGAA 
    AAAACCAGGA CGTTTACAGG GGTCTACTCA AGGAAAGCCA GAGATGGGCC 
    AACCAAGTAA AGGTAGCAAA TTCAGGGCAT CGACTAGTAC TGAGTTAAAG 
    AATACTGTAG CTCCTGGTGG TTCTTCCTCT GCACAGGCTT GCTCTAATAC 
    TCTACTTTCT ACTGGTACCG GTGCAAAAGA TGGAAAGAAA GAAACTGCTA 
    CTGGAACACT CTTTGTCGGA TCTGATGGCC ATGGCAACCA CCCAGAGAAG 
    GATAGTGAAA ATTGTAAAGA GAAAAATGTT GTACCACCTG TTAATGAATC 
    GCCACATGCT AAAGATACTG ATGATGGCTT GATAGAGATT ACAGTCCCTG 
    AGCTGGAGAT CACCCGTGCA GAAGCAGAAG CAGAAGCAGA AGCGCATGTT 
    TGTGAGAGTG ATGAGGACTT ACCCAATTAT TCTGACATTG AGGCTATGAT 
    ACTTGACATG GACTTGGAAC CTGATGATCA AGATAATTTT GATCTCGAAG 
    TCTCCAAGTA TCAGAGCCAA GACATGAAAA GAACAATCAT AAGACTTGAG 
    CAGGCTGCTC ATTCATATAT GCAAAGAGCC ATTGCTTCCC GTGGTGCATT 
    CGCTGTTTTA TATGGCAGAT ATTCAAAACA CTATATCAAG AAGCCTGAGG 
    TTTTGGTGGG TAGATCAACA GAAGACCTCG CTGTGGACAT TGATTTGGGA 
    AGAGAAAAGC GGGGTAGCAA AATATCTCGA CGACAGGCGA TCATACGGCT 
    GGGTGATGAC GGTTCGTTTC ATATAAAAAA CCTGGGGAAG TATTCAATCT 
    CAGTAAATGA GAAGGAAGTA GATCCTGGAC AGAGTTTAAT CCTCAAATCC 
    GATTGTCTAG TTGAGATACG GGGAATGCCT TTTATATTTG AAACAAACCA 
    AAGTTGCATG CAAGAGTACC TGAAGAGAAG AGGGAAAGTG AACTGAGACC 
    AGATCAAGAG TGCGTGTTGT TTGTGTAGAT GAATGATGCA TCTCTTGTGT 
    AATGTACCTT AGCCATAGGA ACACGTCTTG TAGATCTTTT AATACATCTT 
    TAGTTCCGCA TCATGCATAG TTGACCCTGT TTTAAGGCGT TGAAATGAAA 
    ATACAAGTCT CTTGTATCTG AATTTGTGTT TTAAGCGAAG AATGATTGTT 
    CTTGTGAAAA G

    Gene models with high sequence identity

    1. AT3G54350.1 [+] show detail - Forkhead-associated (FHA) domain-containing protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Forkhead-associated (FHA) domain 9.674
    HMMSmart Forkhead-associated (FHA) domain 0.00041
    superfamily SMAD/FHA domain 2.2e-11
    HMMPfam GDP-fucose protein O-fucosyltransferase 2.3e-09
    HMMPfam Forkhead-associated (FHA) domain 2.1e-07
    HMMPanther MICROSPHERULE PROTEIN 1 8.9e-98

    See the detailed result >

    AT3G54350.1

    Model type
    Protein coding
    Short Description
    Forkhead-associated (FHA) domain-containing protein
    Computational Description
    embryo defective 1967 (emb1967); CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: Forkhead-associated (FHA) domain-containing protein (TAIR:AT1G75530.1); Has 387 Blast hits to 260 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 229; Fungi - 23; Plants - 94; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR