F05317

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05317

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05317

Determination of introduced cDNA(s)

  • RAFL09-47-N12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-47-N12 - Resource: pda06357

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-47-N12 - full reading 
    GGCTTCAATT TTTGCGTTTT CTCTGCAACT CGCCGTCAAG GGTAGAAGAA 
    TTAGGGGTTC CTGTTCTTAA CTGCTTGAAG ATGACGTCTT ATGGAGATAG 
    ACTGAAGTCG ACCTCCATTA ATGGAGTTAA GTTATACAAT GTTTCTTCTG 
    CTCCCAATGT TCCTACTTGG CTTAATCCTA AGAAGCAACG AGCTCTCCGC 
    AAAAACCCTC ATTATATGCA AAGAGTGGAG CTGATTCAGG AGTTGAAGTT 
    TGAGACTGCC ACTACTAGAA TCAAAGCGAC TCCAGACGGA GAGTATCTGA 
    TTGCTTCAGG CATATATCCA CCACAGGTAA AAGTTTATGA GCTAAATCAG 
    CTTGCTTTGA AGTTTGAGAG GCATTTGGAC TCGGAAATAG TTGATTTCGA 
    GATATTGGAT GATGACTTCT CAAAGCTTGC CTTCTTATGT GCTGATCGTT 
    CTATTAATTT ACACGCCAAA TACGGGAAAC ACCACACTTT ACGAATTCCA 
    AGGATGGGGA GAGATATGAC ATATGATTCC TGGTCTTGTG ATCTTCTTTG 
    CGCTGCTTCC TCACCTGATC TATATAGAAT CAATTTGGAG CAGGGAAGAT 
    TTCTTTCTCC TCTCAGCACT CAATCCCCAG CGCTTAATGT CGTTTCTCGA 
    AGCAACCTCC ATGGATTAGT TGCTTGTGGT GGTGAGGATG GTGCTGTGGA 
    ATTTTTTGAT ATGAGAATGA AATCATCTGC TGCTAGAATT AACGCGGTCA 
    CACATGGTGG TGATGCTGCT GCGGAGGTTA CTGCTATAGA GTTTGATGAC 
    AGTGAAGGTC TTCAAGTAGC TGTCGGGAGT AGCGCGGGAA AGGTATTCAT 
    ATACGACTTG CGTACTTCAA CTCCCATAAG AGTGAAGGAT CACATGTACG 
    AGAGCCCAAT TTTGAATATT AAGTGGCAAC GGACTCTTAA TACTCAACAA 
    CCTAAGTTGA TTACTACCGA CAAACACATT GTTAGAATAT GGGATCCAAA 
    CACGGGAGAA GGTATGACCA GCATTGAACC GACTCAAGGA GGAATAAACG 
    ACATTTGTGT GTTCCGTGGA AGCGGACTTA TGCTTCTTGC TTTAGACTCT 
    AGCCTAATCC CATCTTACTT CATACCTGAA CTCGGTCCTG CCCCCAAATG 
    GTGTTCTCCT CTTGAAAATC TAACGGAAGA GTTGGAGGAA AGTGCACAGA 
    CAACTATTTA TGATAATTAC AAATTTTTGG CAATGGAAGA TCTGGAGAAG 
    TTGCAGCTAA CTCATTTGAT TGGAACAGAT CTTTTGAAAG CATCTATGCA 
    TGGATATTTT ATTAATTACC ATTTGTACAA AAAGGCTTTA GCAGTGATTG 
    AACCTTTTGC ATTTGATGAT TACTTAGAAC GTAGGAAGCA AGAGAAGTTA 
    GAAGAGCAGC GTACGCAGAG AATCACAAAA AAGAGACGGT TGCCAAAGGT 
    TAACCGAGAC CTTGCAGCAA GGCTTCATGG GGACGAATCA GAGGAGGAAA 
    ATAAAACTGC CGAGGATGGG GAGGCCACCA AGAAAGTGCT GAAAAAGAAG 
    AAACCCATAC TTACTGACGA GCATTTCGTA GATGGTCGGT TTGGTTCGAT 
    GTTCCAAAAT CCGGACTTCC AAATTGATAA GGACTCATAT GAATATGGTG 
    TCCTACACCC TGTTGCTTCT TCGAAGAAGC AACCTTCTCT GTTAGATGAA 
    CACTTTGAAG CTGTATCAGA TGATGACGAG AACAGTGATT CTGATGCATC 
    ACAGCCTTCA GATGACGAGG CCGACGATGG AGACGCAACT AGGCCAAGCA 
    AGAAAGCGAG AACTCCGAAG TTGTATGAAG TGAAAGATGA GCGGCATGCC 
    GCAGCTTATC ACAACCGCAC TTCACTGGCT AAAGAAGATA GTCTTCCTAT 
    GGGCGAGCGT GTCAAGGCTA TAGAGAACCG GCGTGGCAAC TTTGGAGGCT 
    CGAAAGATAT CAAATTCGGT CCTGGAGGAT CACGGGAGTT TTCTTTCAAG 
    GCGAGAGGGT CATCAAAGTA CAAAGAAGAT AGAGACGATG AGTATGAAGA 
    TGGGCAAAGA AACAAGAGGA GAGGAGTTCA GTCTCTTGGA CTGAAATCAA 
    CAAATATTAG AGGCGGTTTC AGAGGTAGAG GAGGTGGTGG TTTTAGAGGG 
    AGAGGAGGCG GCGGTTCCCG GGGAAAAGGT GGCCGTGGTG GTGGGCGTGG 
    AAGAGGCCGG CAATGATAAA TGTAGCTTTT CAGGGGCTTT ATTAGATTTG 
    AAAAATGTGT CACCTACTAT TGAGAATCTT GAAACTTAAT TGATCACATA 
    TACAATTTTG G

    Gene models with high sequence identity

    1. AT3G56990.1 [+] show detail - embryo sac development arrest 7
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily WD40 repeat-like-containing domain 1.6e-24
    HMMPfam NUC153 4.1e-11
    Gene3D WD40/YVTN repeat-like-containing domain 5.1e-13
    HMMPanther UNCHARACTERIZED 8.5e-266

    See the detailed result >

    AT3G56990.1

    Model type
    Protein coding
    Short Description
    embryo sac development arrest 7
    Computational Description
    embryo sac development arrest 7 (EDA7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), NUC153 (InterPro:IPR012580), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR