F05522

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05522

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05522

Determination of introduced cDNA(s)

  • RAFL06-09-N10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-09-N10 - Resource: pda07523

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-09-N10 - full reading 
    GAGAGCAAAG ACTTGACCTT TTTCACTTCC TTCTCACTGA TCGTCGAACA 
    ATAAGGCCGT CGCATCTCCC AGTTATGGCT ATGGCCGGAG AATCTTCCGG 
    CAAAAAAATT GGAGACTGTG ACGGTAAAGT CGCGGGGAAC AGACAGCGAA 
    AGGTGGGTCT TATTTACGAC GAGACGATGT GCAAACACGA CACACCTGAC 
    GGCGAGGATC ACCCTGAGTG TCCCGACCGC ATCAGAGTTA TCTGGGAGAA 
    GCTTCAGCTC GCCGGAGTTT CTCAAAGATG TGTGGTTCTT GGTAGTAGCA 
    AAGCAGAAGA TAAGCATCTC CAATTGGTTC ACACAAAGGA CCATGTTAAT 
    TTAGTTAAGA GTATTAGCAC AAAACAGAAA GATTATCGGA GAAACAGGAT 
    TGCTTCACAG TTGAATTCGA TTTATCTGAA TGGAGGTTCA TCTGAAGCCG 
    CATATCTTGC AGCTGGTTCT GTTGTAAAGT TGGCAGAAAA AGTTGCAGAA 
    GGAGAGTTAG ATTGTGGTTT TGCTATTGTC AGGCCCCCAG GGCACCATGC 
    TGAGGCAGAT GAAGCCATGG GTTTTTGTTT ATTCAACAAT GTTGCCGTTG 
    CTGCTAGTTT TTTACTAAAC GAAAGACCGG ATCTAGGGGT CAAGAAAATT 
    CTGATCGTTG ATTGGGATGT CCATCACGGA AATGGTACCC AGAAGATGTT 
    TTGGAAAGAT CCTCGTGTAC TATTTTTCTC TGTTCATAGG CATGAGTATG 
    GGGGTTTCTA TCCAGCGGGT GATGATGGCG ATTATAACAT GGTTGGGGAA 
    GGTCCAGGTG AAGGGTTTAA CATAAATGTT CCATGGGATC AAGGACGATG 
    TGGAGATGCA GATTATCTTG CTGCATGGGA CCATATCTTG ATTCCTGTGG 
    CGAGGGAATT TAACCCGGAT GTTATTTTTC TTTCAGCTGG ATTTGATGCA 
    GCTATTAATG ATCCGCTAGG GGGTTGTTGT GTGACCCCAT ATGGATATTC 
    AGTTATGTTG AAGAAGCTGA TGGAGTTTGC ACAAGGAAAG ATAGTGCTGG 
    CGTTAGAGGG AGGGTACAAT CTTGACTCAA TTGCAAAGTC TTCACTTGCA 
    TGTGTCCAAG TTTTGCTTGA AGACAAACAA ATTCAAGGAC CTCCGGAAGC 
    ATACCCATTC GAGTCGACAT GGCGTGTCAT ACAAGCGGTG CGCAAGAGGC 
    TATGCACATA TTGGCCTTCA CTTGCAGATG AATTATCGTG GAAGCTAATT 
    AATCAGAAAA CTCCTACTCC AATCATCCTT ATCTCAAGCT CCGACTCTGA 
    AACTGAAGAC AACGCCCAAG GACTCCTGGA TCAAATGTCG AAACTCAGCA 
    TTGAAAACCC TCAAGGTACA CTACTTGAAA ACCACCAAGT AGAACCTGCA 
    TCTACATCTT GGAGAGCTGA TCTCGCAAAG GTTGACGTTT GGTATGCCTC 
    TTTTGGATCC AACATGTGGA AACCAAGGTT TCTTTGCTAT ATTCAAGGGG 
    GACAGGTCGA TGGATTGAAA AAGGTATGTG TTGGCTCAAT GGATAAAAGT 
    CCACCAAAGG AAACAGTGTG GGAAACATTT CCACATAGAT TGTTCTTTGG 
    CCGTGAATCT TCAGTTGGTT GGGGTGTAGG AGGAGTTGCT TTCACCAACC 
    CCCTTGCTAA TCTCATTGAT CAAACTCACA TGTGTTTGTA CCGTATCACG 
    CTTGAGCAGT TCAATGACGT TCTGTCTCAA GAAAATGGTT TGAATGTGGA 
    TTCAGATTCT CCGGTCTTTG ATCTAGCTGC TTTGCAGTTA GTAGATAACA 
    AAGGATCCAT TTTAGAAGCT CCTTTGAATA GTTGGTATGG AAATGTTGTC 
    TGCTTGGGAA AAGAACGCGA CATTCCTATA CTTACAATGA CTTGCACGCT 
    TTCCGCTGTT GAGAAATTCA AATCCGGTGA GATCCCTATA AGACCTCCTG 
    CAAAAGCTTA TGCCAACACT TTAATAAGGG GACTTGTGGA AGGAGGAAGA 
    TTATCTAAAG AAGAAGCTGA GGCTTACATA GACAAGGCTG TGTCTAAACC 
    TCTCTAGTGT ATAATTATTT ACTCAGAAAC CGCCCGTTTG AACACGATTT 
    GGAGCTTCGG GTTTCTGAGT TATTCAATTA GGATAAAAAC CACAAGTTTA 
    GGAATATTGT GAGACCTTTG AATTTGTCTT TTGAAAGAGA GGACTGTGTC 
    CTCTGTTAGC TGTGTTGTGC TTGCTCCCTA AGCAAACTCT CAATGTATTT 
    TAGTTATCTT CGGGTTTTAG GCTTTACCAA GAAGCTGTAT TCGGTAAATG 
    TATTAAAGAA CCCTCCAAAC TGCTTTATAT TGACCGGAGA GAAACATTCT 
    TATTCTTCGG AATGGTACTT TGAAGTTTGA AGAGTTATTT TAGAAAAAAA 
    AAAAAAAAA

    Gene models with high sequence identity

    1. AT5G61060.1 [+] show detail - histone deacetylase 5
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Histone deacetylase superfamily 8.1e-93
    HMMPanther HISTONE DEACETYLASE HDA1 0
    HMMPanther Histone deacetylase superfamily 0
    superfamily Arginase/deacetylase 1.2e-111
    FPrintScan Histone deacetylase superfamily 2.2e-08
    FPrintScan Histone deacetylase superfamily 2.2e-08
    Gene3D Histone deacetylase superfamily 1.2e-100

    See the detailed result >

    AT5G61060.1

    Model type
    Protein coding
    Short Description
    histone deacetylase 5
    Curator Summary
    Encodes a member of the histone deacetylase family.
    Computational Description
    histone deacetylase 5 (HDA05); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase of the RPD3/HDA1 superfamily 18 (TAIR:AT5G61070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR