F06229

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06229

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06229

Determination of introduced cDNA(s)

  • RAFL06-75-E07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-75-E07 - Resource: pda03555

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-75-E07 - full reading 
    TCTGCTCCGT CAAGCTGAGG AGGATAAAAA CCCTAGGGTG AGTGAGACAG 
    AGAGAAGCGA AAATGGTGCA GCGCCTTGTT TACCGATCAC GACACAGTTA 
    CGCCACCAAA TCCAACCAGC ACAGGATCGT CAAAACTCCA GGAGGTAAAT 
    TGACGTACCA GACCACTAAG AAGAGAGCTA GTGGACCTAA ATGTCCCGTT 
    ACCGGCAAGC GTATTCAGGG TATTCCTCAC TTGAGGCCAA CTGAGTACAA 
    GAGGTCACGT TTATCAAGAA ACAGGAGGAC CGTGAACCGT GCTTATGGTG 
    GGGTTTTGTC TGGTTCTGCT GTTAGGGAAA GAATCATTCG TGCCTTCCTT 
    GTGGAGGAGC AAAAGATTGT GAAGAAGGTT TTGAAGCTTC AGAAGGCAAA 
    GGAAAAGGTT GCTCCCAAGT GATCTAGACC CTATTAGTTT TTATGTTTTA 
    TGGCTCTGTT CTAGCGATAG TACTGGTTGC AGAGAAAAAC ATTGTGTACT 
    CATCAAAAAA TTTAAGCTTT TTTGTATTGG TTTTGGACC

    Gene models with high sequence identity

    1. AT1G69620.1 [+] show detail - ribosomal protein L34
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Ribosomal protein L34e 5.6e-30
    FPrintScan Ribosomal protein L34e 5.6e-30
    FPrintScan Ribosomal protein L34e 5.6e-30
    FPrintScan Ribosomal protein L34e 5.6e-30
    PatternScan Ribosomal protein L34e, conserved site 0
    HMMPanther Ribosomal protein L34e 1.7e-47
    HMMPfam Ribosomal protein L34e 3.8e-35

    See the detailed result >

    AT1G69620.1

    Model type
    Protein coding
    Short Description
    ribosomal protein L34
    Curator Summary
    putative 60S ribosomal protein L34
    Computational Description
    ribosomal protein L34 (RPL34); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane, large ribosomal subunit, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e, conserved site (InterPro:IPR018065), Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: Ribosomal protein L34e superfamily protein (TAIR:AT1G26880.1); Has 951 Blast hits to 951 proteins in 317 species: Archae - 65; Bacteria - 0; Metazoa - 298; Fungi - 143; Plants - 198; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR