F06308

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06308

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06308

Determination of introduced cDNA(s)

  • RAFL06-74-M22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-74-M22 - Resource: pda03525

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-74-M22 - full reading 
    AGGACGAATA TCTCTCTCTC TCTTTCTCTC TGCTTCCTTC TCGATTTCTG 
    ATTCGCTCAC CGGCCGAGGA ATCAGATATG GCGACGAGAA CGGAATCGAA 
    GAAGCAGATT CCGCCGTACA TGAAAGCAGT CTCAGGCTCA CTAGGCGGAG 
    TGGTCGAGGC TTGTTGTCTC CAACCAATCG ACGTAATCAA AACGCGTCTC 
    CAGCTAGATC GCGTCGGCGC TTACAAAGGA ATCGCTCACT GTGGTTCGAA 
    GGTGGTTCGC ACCGAAGGAG TTCGTGCTCT CTGGAAAGGC TTAACACCGT 
    TCGCTACTCA TCTCACGCTT AAGTACACGC TTCGGATGGG ATCCAACGCC 
    ATGTTTCAAA CCGCCTTTAA GGATTCCGAG ACCGGAAAGG TCAGCAATCG 
    TGGCCGTTTT CTTTCCGGAT TCGGTGCCGG TGTTCTTGAA GCTCTCGCCA 
    TTGTTACACC CTTTGAGGTG GTGAAAATTA GACTTCAGCA GCAGAAAGGA 
    TTGAGTCCTG AGCTTTTCAA GTACAAAGGA CCAATACATT GTGCTAGAAC 
    CATCGTGAGA GAAGAAAGCA TACTTGGTTT ATGGTCAGGT GCAGCACCGA 
    CGGTTATGCG AAACGGAACC AACCAAGCTG TAATGTTCAC AGCGAAAAAC 
    GCGTTTGACA TACTCTTGTG GAACAAACAC GAAGGTGACG GTAAAATCTT 
    GCAGCCATGG CAGTCAATGA TCTCAGGGTT TTTAGCTGGA ACCGCAGGTC 
    CGTTCTGCAC AGGACCGTTT GATGTGGTGA AAACGAGGTT GATGGCTCAG 
    AGCAGAGACA GTGAAGGTGG GATTAGATAT AAAGGGATGG TTCATGCCAT 
    TAGAACGATT TATGCAGAGG AAGGATTAGT GGCCTTATGG AGAGGGTTAT 
    TGCCGAGGCT AATGAGGATT CCTCCAGGAC AAGCCATTAT GTGGGCTGTT 
    GCTGATCAAG TCACTGGTCT TTATGAGATG AGATATCTTC GGAATGCTCC 
    TTTATAGGCA GAGACACTTT TTGAAATTCA GTGTTTCTAG TTGGTGTATT 
    TCTGAAAATT CTTGTTAGGA TTTTGATTTG ATCAAGAAAA ATAAACCTAA 
    TCGCACATTT TATAACGATG TTACTCTATA ATCAAATTTT GGGAGTTCCA 
    TTTTGTTGTT GTCTGTAAGA CTCTGACTAA ATAAGTTTTA CT

    Gene models with high sequence identity

    1. AT5G01340.1 [+] show detail - Mitochondrial substrate carrier family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Mitochondrial substrate/solute carrier 1.4e-18
    HMMPfam Mitochondrial substrate/solute carrier 5.8e-19
    HMMPfam Mitochondrial substrate/solute carrier 5.9e-25
    FPrintScan Adenine nucleotide translocator 1 7e-08
    FPrintScan Adenine nucleotide translocator 1 7e-08
    FPrintScan Adenine nucleotide translocator 1 7e-08
    ProfileScan Mitochondrial substrate/solute carrier 20.368
    ProfileScan Mitochondrial substrate/solute carrier 22.942
    ProfileScan Mitochondrial substrate/solute carrier 25.13
    superfamily Mitochondrial substrate carrier 1.4e-81
    HMMPanther TRICARBOXYLATE TRANSPORT PROTEIN 1e-141
    HMMPanther Mitochondrial substrate carrier 1e-141

    See the detailed result >

    AT5G01340.1

    Model type
    Protein coding
    Short Description
    Mitochondrial substrate carrier family protein
    Computational Description
    Mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G37890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR