F06615

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06615

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06615

Determination of introduced cDNA(s)

  • RAFL09-50-D22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-50-D22 - Resource: pda06445

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-50-D22 - full reading
    AAATTTCGTC GTAATTGGCA ACAGTTAAGC TCTTTGCTAA AAGCTCTAGC 
    TGAGAAGCGA AATTCGAAGT GAAGAATGTC TAATCGCAAA TTCGGAATGG
    AAGGATTCGG CATTAATCGG CAAACTAGCT ACAGTTTCGA GCGATCTCAA
    GCACCGCAAC GTCTCTACGT CCCTCCCTCG TCTCGCGGCG GAGACAACTC
    CGAAGATGCC GATCTTGATA ACATTGATTA CATGGAAAAC GAAGAAGCTG
    AGGAAGATAT TGAGGAAGGC GGTTCTGCTG CGGCTAGCGG TGGCGAGGTT
    GATGAGATCG ATCCATTAGA TGCTTTTATG GAGGGAATTC ACCAGGAGAT
    GAAATCTGCT CCACCTCCTA AGCCAAAGGA GAAACTAGAG AGGTACAAGG
    ACGACGATGA CGATCCTGTT GAGAGTTACC TCAAGGCCAA GAAGGATTTG
    GGCCTGACAC TAGCCGCCGA TGCACTTAAC GCCGGTTATA ACTCCGACGA
    GGAGGTGTAT GCTGCAGCTA AGGCGGTCGA TGCAGGGATG CTAGATTATG
    ATTCCGATGA TAATCCGATT GTTGTGGATA AAAGGAAGAT TGAGCCTATT
    ACAGCTCTGG ATCATAGCTC CATCGATTAT GAACCTATTA ATAAGGACTT
    TTACGAGGAG CTAGAATCAA TATCAGGAAT GACTGAGCAA GAAACCACGG
    ATTACCGTCA GAGATTAGGG ATTCGGGTCT CGGGTTTTGA TGTTCATAGG
    CCAGTTAAGA CCTTTGAGGA TTGTGGATTT TCCTCACAGA TTATGAGTGC
    TATCAAAAAG CAAGCTTATG AAAAACCTAC AGCAATCCAA TGTCAGGCTT
    TACCTATTGT GTTGTCTGGT CGAGATGTTA TTGGCATAGC CAAAACTGGT
    TCAGGTAAGA CTGCAGCGTT TGTTCTTCCA ATGATTGTTC ATATTATGGA
    TCAGCCTGAA CTTCAGAGAG ATGAAGGTCC AATTGGTGTC ATATGTGCTC
    CAACCAGAGA ATTGGCTCAT CAAATCTTCT TGGAAGCCAA GAAATTTTCG
    AAAGCATATG GCTTACGAGT CTCTGCTGTG TATGGTGGAA TGTCTAAACA
    TGAACAGTTT AAGGAACTCA AGGCAGGATG CGAAATAGTT GTTGCTACTC
    CTGGAAGGTT GATAGACATG CTGAAGATGA AGGCTTTGAC AATGATGAGA
    GCCAGTTATT TGGTTCTTGA TGAGGCAGAT CGGATGTTTG ACCTTGGCTT
    TGAGCCACAA GTAAGGTCTA TTGTTGGCCA GATTCGTCCT GATCGCCAGA
    CTTTACTATT TTCAGCCACT ATGCCTTGGA AAGTTGAAAA GTTAGCTAGG
    GAAATCCTTT CAGATCCTAT TAGAGTCACA GTTGGTGAAG TGGGGATGGC
    CAATGAAGAT ATTACGCAGG TTGTCAATGT CATACCTTCT GATGCTGAAA
    AACTTCCCTG GCTACTTGAA AAGCTCCCTG GAATGATTGA TGAGGGTGAC
    GTATTAGTGT TTGCATCTAA AAAGGCCACT GTTGATGAGA TTGAAGCTCA
    ACTTACTCTA AATTCCTTCA AAGTTGCTGC TCTTCACGGT GATAAAGACC
    AAGCATCACG AATGGAAACT CTGCAGAAGT TCAAATCTGG AGTTCACCAT
    GTGCTGATTG CCACTGATGT TGCTGCCCGA GGTCTTGACA TCAAATCGCT
    TAAGACAGTG GTTAACTATG ACATCGCAAA AGATATGGAC ATGCATGTAC
    ATCGTATTGG TAGAACAGGC CGTGCCGGTG ACAGAGATGG GGTTGCCTAC
    ACACTTGTTA CGCAGAGAGA GGCTAGATTT GCTGGTGAAT TGGTAAACAG
    TCTGGTTGCT GCTGGTCAAA ATGTGCCTCC AGAACTCACA GATCTTGCCA
    TGAAGGATGG ACGATTCAAG TCCAAGCGTG ACGGGAGAAA AGGAGGTAAG
    AAAGGCCGAG GAGGAGGTGG TGGAAACAAA GGAGTACGTG GAGTTGATTT
    TGGTCTTGGT ATTGGATTTA GCTCGGAATC TAGTAGGACA CCTTCTTCTA
    AAGCTGCACC AAGTAGAAGT GGGGCAATCA ATTCAGTGAG AACTGGAGTA
    ATGGCCCAAT TCAAGAATAG TTTTGTCGCT GCAACGCCAT CAAATCCACA
    AAACCAAGCT TATCCAAACA AGAGACCATC CCTAATGGGC TTTGTCTCAG
    GTGGTACTAT TGGTGGAGAC ATGGGTAGAA CTCAGAGTCA AGCTCCCCCA
    GTAGCACCTA CTCAAAACGC CTCATCACAC AACTCCAGCC AGAATCACTC
    ACAGAGTTCT GAGAATCGGC CTAGAGAGAG GAAGAGAAGA TCTGGTTGGG
    ATAATTGAGT GAGCCACGTT TTGCATGATG ATAGTGGAAG TGTTTTGCAC
    AACAATGTAA TGAATGTTGT ATAATTTGTT TTATCCTTTC CCGTTTCAGC
    CTTTGAATAT ATAAATTTTC CATTTCTAAA AC

    Gene models with high sequence identity

    1. AT2G47330.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Helicase, superfamily 1/2, ATP-binding domain 32.232
    ProfileScan DNA/RNA helicase, C-terminal 21.399
    ProfileScan RNA helicase, DEAD-box type, Q motif 11.345
    superfamily P-loop containing nucleoside triphosphate hyd 2.9e-69
    superfamily P-loop containing nucleoside triphosphate hyd 2.4e-38
    HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 3.3e-50
    HMMPfam DNA/RNA helicase, C-terminal 1.2e-23
    PatternScan RNA helicase, ATP-dependent, DEAD-box, conserved site 0
    Gene3D no description 1.1e-72
    Gene3D no description 7.2e-38
    HMMSmart DEAD-like helicase, N-terminal 1e-64
    HMMSmart DNA/RNA helicase, C-terminal 9.7e-31
    HMMPanther DEAD (ASP-GLU-ALA-ASP) BOX POLYPEPTIDE 42 1.8e-277
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 1.8e-277

    See the detailed result >

    AT2G47330.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G20920.1); Has 46798 Blast hits to 46047 proteins in 3085 species: Archae - 817; Bacteria - 24489; Metazoa - 6167; Fungi - 4661; Plants - 2616; Viruses - 11; Other Eukaryotes - 8037 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR