F06825

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06825

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06825

Determination of introduced cDNA(s)

  • RAFL09-16-P08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-16-P08 - Resource: pda02001

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-16-P08 - full reading
    AATCATTTGA TTATTTCCTC CTCTCCGTAT CTGTGTCTCT CTTCTCTTGA 
    TCTTTTAGTG TTCTTGCTTT GTCGCTTCAA CGCTTAAGTT TGGATTTGTG
    TGAGTCTGCA TAATCATGGC GAGGAAGATG CTTGTTGATG GTGAGATTGA
    TAAGGTGGCG GCTGATGAAG CCAACGCGAC GCACTATGAT TTTGATTTGT
    TTGTCATCGG TGCCGGGAGT GGCGGTGTTC GTGCTGCTAG GTTTTCGGCT
    AATCATGGCG CTAAGGTTGG TATTTGTGAG CTTCCATTTC ACCCTATTAG
    CTCTGAGGAG ATTGGAGGCG TTGGTGGAAC CTGTGTTATC CGTGGTTGTG
    TTCCTAAAAA GATTCTCGTC TATGGAGCTA CTTACGGTGG TGAACTTGAG
    GATGCTAAAA ATTATGGGTG GGAAATAAAT GAGAAAGTCG ACTTCACATG
    GAAGAAGCTT TTGCAAAAGA AGACTGATGA GATACTAAGA CTGAATAATA
    TCTACAAGCG GTTATTGGCA AATGCTGCGG TGAAATTGTA TGAAGGTGAA
    GGAAGAGTAG TTGGTCCCAA CGAAGTGGAG GTGAGACAAA TAGATGGCGC
    AAAAATAAGT TATACCGCAA AGCACATATT GATTGCCACT GGCAGTCGGG
    CGCAAAAGCC TAATATTCCT GGACATGAGC TGGCTATTAC ATCTGATGAA
    GCTTTGAGCT TGGAAGAATT TCCCAAGCGT GCTATAGTGC TTGGAGGAGG
    GTATATTGCT GTGGAGTTTG CATCAATATG GCGTGGAATG GGTGCTACTG
    TAGATTTATT CTTCAGGAAG GAACTTCCGC TAAGGGGTTT TGATGACGAA
    ATGAGGGCAC TAGTTGCTAG AAATCTTGAA GGAAGGGGCG TTAATCTGCA
    TCCACAAACA AGTTTGACTC AGTTGACAAA AACAGACCAG GGGATCAAAG
    TCATATCGTC CCATGGGGAG GAATTCGTGG CAGATGTCGT CCTATTTGCT
    ACTGGCAGAA GTCCTAATAC CAAAAGATTG AATTTAGAAG CTGTTGGTGT
    TGAACTTGAT CAGGCTGGAG CTGTGAAGGT TGACGAGTAT TCACGAACTA
    ATATACCTAG CATATGGGCT GTAGGAGATG CCACAAACCG AATTAACCTT
    ACACCTGTTG CGTTAATGGA GGCCACCTGT TTTGCGAACA CTGCTTTTGG
    TGGAAAGCCT ACTAAAGCAG AATACAGCAA TGTCGCCTGT GCTGTATTTT
    GCATACCACC ACTAGCTGTA GTGGGTCTCA GCGAAGAAGA AGCAGTAGAA
    CAAGCAACCG GTGATATTCT GGTCTTCACC TCAGGCTTTA ATCCAATGAA
    GAACACCATT TCTGGACGCC AGGAAAAGAC ATTGATGAAG CTAATAGTTG
    ATGAGAAGAG TGATAAGGTT ATTGGAGCAT CCATGTGCGG TCCTGATGCA
    GCTGAGATCA TGCAGGGGAT TGCAATTGCG CTCAAGTGTG GAGCAACCAA
    AGCACAATTT GATAGCACGG TTGGGATACA TCCATCTTCT GCAGAGGAAT
    TTGTGACAAT GCGCAGTGTG ACCAGACGCA TTGCCCACAA ACCCAAACCT
    AAGACAAATC TATGAACCGC AAAATATAAA GAGCTATATA GCATGAAAAC
    TCGGTACACT TAATTTGATC AAAGAGTCAG ACAACGATGA GTTTAATCAT
    ACTCGTGTCC CAATAAAGGA TTTGTAATTT TTGTTTGTTT GTATGATGCT
    TCTCTTCTTA CTTACTTGAG AAAACATCAA GGTTTCTTCT CTTATTGCTT
    AGTGGAACTT TATTACAAAG AATTATTCTA CGAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT3G24170.1 [+] show detail - glutathione-disulfide reductase
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Pyridine nucleotide-disulphide oxidoreductase, class I, active site 0
    superfamily FAD/NAD(P)-binding domain 1.5e-66
    superfamily FAD/NAD-linked reductase, dimerisation 1.6e-31
    HMMTigr Glutathione-disulphide reductase 0
    HMMPfam FAD-dependent pyridine nucleotide-disulphide oxidoreductase 5.9e-46
    HMMPfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation 6.7e-30
    HMMPfam Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region 1.5e-16
    HMMPanther GLUTATHIONE REDUCTASE 1.2e-260
    HMMPanther DISULFIDE OXIDOREDUCTASE 1.2e-260
    Gene3D no description 1e-65
    Gene3D Pyridine nucleotide-disulphide oxidoreductase, dimerisation 1.7e-31
    Coil coiled-coil 0
    FPrintScan PNDRDTASEI 3.2e-61
    FPrintScan PNDRDTASEI 3.2e-61
    FPrintScan PNDRDTASEI 3.2e-61
    FPrintScan PNDRDTASEI 3.2e-61
    FPrintScan PNDRDTASEI 3.2e-61
    FPrintScan PNDRDTASEI 3.2e-61
    FPrintScan PNDRDTASEI 3.2e-61
    FPrintScan PNDRDTASEI 3.2e-61
    FPrintScan PNDRDTASEI 3.2e-61
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.5e-30
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.5e-30
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.5e-30
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.5e-30
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.5e-30
    FPrintScan Mercuric reductase 3.4e-05
    FPrintScan Mercuric reductase 3.4e-05
    FPrintScan Mercuric reductase 3.4e-05

    See the detailed result >

    AT3G24170.1

    Model type
    Protein coding
    Short Description
    glutathione-disulfide reductase
    Curator Summary
    Encodes a cytosolic glutathione reductase.
    Computational Description
    glutathione-disulfide reductase (GR1); FUNCTIONS IN: NADP or NADPH binding, glutathione-disulfide reductase activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction, glutathione metabolic process, cell redox homeostasis; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Mercuric reductase (InterPro:IPR000815), Glutathione-disulphide reductase (InterPro:IPR006324), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: glutathione reductase (TAIR:AT3G54660.1); Has 36408 Blast hits to 36344 proteins in 3180 species: Archae - 854; Bacteria - 26624; Metazoa - 911; Fungi - 472; Plants - 667; Viruses - 0; Other Eukaryotes - 6880 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR