F07326

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07326

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07326

Determination of introduced cDNA(s)

  • RAFL09-06-E05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-06-E05 - Resource: pda05071

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-06-E05 - full reading 
    ATAACTCACA CTCTCTCTTC AATCCTTTCC TTTCATTGTA GTTAAACAAA 
    GATTACGATT ATGGCCACAT CAGCTATCCA ACAATCCTCC TTCGCCGGCC 
    AAACGGCTCT CAAGCCCTCC AGCGACCTCA TCCAAAAGGT GGGCGTCTTG 
    GGCGGTGGCC GTGTGACCAT GCGTCGTACC GTCAAGTCTA CTCCCCAAAG 
    CATCTGGTAT GGACCAGACC GTCCCAAGTA CTTGGGACCA TTCTCGGAGA 
    ACACACCGTC TTACTTAACT GGAGAATACC CCGGAGACTA CGGCTGGGAC 
    ACCGCTGGAC TCTCGGCTGA CCCGGAGACA TTCGCTAAGA ACCGTGAGCT 
    TGAAGTAATC CACAGCAGAT GGGCTATGTT GGGTGCTCTC GGATGCACAT 
    TCCCTGAAAT TCTCTCCAAG AACGGTGTTA AATTCGGAGA AGCCGTGTGG 
    TTCAAGGCAG GCTCTCAGAT TTTCTCAGAA GGAGGTCTTG ATTACCTCGG 
    AAACCCTAAC TTGATCCACG CGCAAAGCAT CTTAGCCATC TGGGCTGTTC 
    AAGTTGTGCT CATGGGGTTC ATTGAAGGCT ACAGAATCGG AGGTGGACCA 
    CTCGGAGAAG GACTTGACCC GCTTTATCCC GGAGGTGCGT TCGACCCATT 
    GAACTTGGCT GAGGATCCAG AGGCTTTCTC TGAGCTGAAG GTGAAGGAGC 
    TCAAGAACGG TCGTCTTGCC ATGTTCTCTA TGTTTGGATT CTTTGTCCAA 
    GCCATTGTTA CTGGTAAAGG TCCCATTGAG AACTTATTTG ATCATTTGGC 
    TGATCCTGTG GCTAACAACG CCTGGTCTTA CGCTACTAAC TTTGTCCCCG 
    GAAAGTAATT ATCTTATGTA TTTGCTTCAT AATCTCTCTG CTTTGTAAAC 
    TCGTGATTGT GTAATATTGA CGTTTGATGT GAATTTGGCA CTTAATGATG 
    TTTCTTGG

    Gene models with high sequence identity

    1. AT2G05070.1 [+] show detail - photosystem II light harvesting complex gene 2.2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Chloroa_b-bind 2.9e-49
    HMMPanther Chlorophyll A-B binding protein 9.9e-191
    superfamily Chlorophyll a-b binding protein 6.3e-81

    See the detailed result >

    AT2G05070.1

    Model type
    Protein coding
    Short Description
    photosystem II light harvesting complex gene 2.2
    Curator Summary
    Encodes Lhcb2.2. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.
    Computational Description
    photosystem II light harvesting complex gene 2.2 (LHCB2.2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: guard cell, juvenile leaf, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.1 (TAIR:AT2G05100.1); Has 2376 Blast hits to 2314 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2060; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR