F07327

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07327

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07327

Determination of introduced cDNA(s)

  • RAFL09-66-O06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-66-O06 - Resource: pda08654

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-66-O06 - full reading 
    TTTCATCAAC ATAAAACATC ATATGAAAAG GTTGTCGGAT CCACAGAATT 
    TATTTTTCTC CATTGGGACT GGATGAGTAG GCAGTTTCTT GTCTTTGCTG 
    AGTTGCTGGA GACAAGCTCA GCAACTGGTC AGAGCTTAAC ATCCTCAAAC 
    CAAGGAACTG CGGAAATATC TTTGACTGAG TTTGAGTTTT ACCCTGCCTA 
    TTATTATCAG TTGGCTGCTC ATTACTTGAA GGATAAGAAA TCTGCCCTGG 
    AACTGTTGTT GTCAATGTCT GAAATAGCTC AAGAGATTGA TAGCAGCTCT 
    GCATCTATTA CTCCTTCAGT CTATGTGGGT CAGTTCGCTC AGTTGCTTGA 
    GAAGGGAGAA GCTATTACAC TTCACTCTAT AACGGATGAA GAGTACACAC 
    GGTATACAAT TTCAGAAGCA AAGAGAGTTC AGGATTCCCT TCAAATTATT 
    GCTTGGCTGA AGAGATCTTA TGAATCATTT ACCAACCTTA AAGCCCAGAG 
    GATGGCTGCT CTTTGTGCCT TTGAAGTAGC CCGGGAGTAC TTTGATTTGG 
    CTGATCCCAA CAACGCAAAA TTCTTTTTCG ATATTGCTGC AAACTTGTAC 
    AGACAAGAAG GTTGGGTAAC TTTGCTCTGG GAGGTGTTGG GTTACCTGCG 
    AGAGTGTTCG AGAAACCTTG ATGCTTTGAA AGATTTTGTA GAGTTTTCAC 
    TTGAAATGGT TGCCCTGCCT GTAACATCTT ATGAGAATTC TGGGAACTTA 
    AGAAACAAAA ATTATGGTCC TGGAGGTCCT GCAACAATTT CAGGAAGAGA 
    AAGTATACAT CAAGAAGTTT TTACTCTTGT TTGTCGTGAA GCCGAGCTGT 
    TATCATCTAC CGAAGGAAGT GGGTTCAAAT TAGCCACTGA TAGCCCTCTT 
    CATCTCGAGA TTGATCTTGT CAGTCCTCTG AGACCTGTTC TCCTAGCTTC 
    AGTTGCTTTT CACGATCAAA TGATCAAGCC TCACGCTTTG TGCTCTTTTA 
    CGTTGTCACT ACTTTCTCAT TTACCTCTTC CAGTTGAAAT AGATCATCTA 
    GAAGTTCAGT TTAATCAATC TACATGCAAC TTTGTCATCA GAAATTCCCA 
    GAGGCCTCTG TGGGCTTCGG CGTCTAACAC TGTGAAAAGT GGTAGCCAAG 
    TGGAGAATGC GCCATTGCTG GTGCTTGTGC CGAATAATTG GTTAAGGTTG 
    ACATATGCAA TCAAGTCTGA GCAAAGCGGC AAGCTTGAGT GTCTTTCAGT 
    TCTTGCAAAA TTGGGGCCTC TTTTCACAAT CTGTTCAAGA GCCGAGAGTC 
    CTGCTGCAAT GGAGGATTTA CCTGTCTGGA AGCATGAAAA TCGTGTTGAA 
    TCTCTGCCAA CAAAGGACCC AGTTCTTGCA GTATTTGGCC AGAAAGCTAC 
    TCAAGTTGAT GAACCCGAAC CACAGGTGGA CGTCAGTCTA GGTGCTTCTG 
    GTCCTGCCCT AGTTGGAGAA GATTTTGCGA TGCCAATCGT GGTAACTTCA 
    AAGGGTCATG CCGTATACAG TGGTGAATTG AAGATTAATC TAGTTGATGT 
    GGGTGGTGGT GGTTTGTTTA GCCCAAGAGA AGCAGAACCG TTTTCTCTAG 
    AAAGCCATCA TGTTGAAATC TGTGGTATTG ATGGGGCAGA GGGCAACAAT 
    GAATCCGAGT CTGAAACAGG GAGCATAAAG AAAATTCAGC AATCTTTTGG 
    GCTGGTTTCT GTTCCATACC TGAAGGAAGG AGAATCATGG TCGTGCAAAC 
    TGGAAATCAA GTGGCATAGA CCCAAGCCTG TGATGCTTTT TGTGTCATTG 
    GGTTACTTGC CACATGGCAG TGAAGCCAAT ACCCAAAAAG TTCACATACA 
    CAAGAGCTTG CAGATTGAAG GGAAGATGCC TCTTTTAATA AGCAATCGTT 
    TTATGTTGCC ATATAGAAGG GATCACCTAT TGCTCAATAG GATAAAGCCA 
    GCCCCTGATT CTGAAGACGT GTCTTCTCTG CCGCTGAACG AAAAAAGTGT 
    GTTAGTTGTC AGTGCCAAAA ATTGCTCAGA AATAGCGCTG AAACTGGTGT 
    CCATGTCCAT TGAATTTGAT GATGAACAAG GGGAAACTTC ATGTTTGATT 
    CAGCAGGGTG GTGGGTGTGG AGACTCCCCA AGCTCTGCAA ATCTTGCGCC 
    AGGGGAAGAG TTCAAAAAGG TTTTCACAGT CATACCAACG ACGAGAACTC 
    CAAAGCTTGG TTTGGGATCA ATACATTTAA AATGGAGGAG AGAGGGAGGT 
    AACATAACAG AGGCATATGT TTCAACAAAG CACAAACTTC CTGAAGTAAA 
    TGTGGAGGCA TCACCACTGG TAATGAGTTT GGACTCTCCT CCATATGTCA 
    TTCTTGGAGA ACCCTTCACT TACGCTGTTA GAATCTGCAA CCAGACACAG 
    TTGCTGCAAG AAGCAAAGTT TGGTCTGGCT GATGCACAGA GTTTTGTCCT 
    GTCTGGGTCT CACAGCAATA CGGTTTCAGT CCTTCCCAAG TCAGAACACG 
    TCTTAAGTTA TAAGCTAGTG CCTCTGACTT GCGGTGAACA GCAACTCCCA 
    AAGATAACTT TGACATCAGC GCGATATGCT GCTGAGTTTC AGCCATCTGC 
    GGTTGCTTCA AGTGTCTTTG TGTTTCCCTC AGCCCCACAA GCCGAGAAAG 
    CCATCTCTAC CAGCAAGTAG TGTAACTTCG CATGACTTGG GTTTTCAGAT 
    GTCTATGCAG TTTCAGCCAT ATGTGGTTAA GACAGACATA TTGAATCAGT 
    TTGGTAAATT TTGATCCTGA AGTGTCGCCT ATGTTGTATT TTCATTTTTC 
    CTTCTGTTGT TGATAATAAT GGATATTTTT TGGAGAACCC AAACTAGACA 
    CATAGGATTA GGACACAATC TGTTTTGAGA TGTGTTTTGT GGCAACTGTT 
    TTTCTTC

    Gene models with high sequence identity

    1. AT5G65950.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: ce...
      E-value: 0; Score: 99.97

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Foie gras liver health family 1 3.6e-68
    HMMPfam Protein of unknown function DUF1683, C-terminal 2e-30
    HMMPanther FOIE GRAS 6.2e-167

    See the detailed result >

    AT5G65950.1

    Model type
    Protein coding
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880), Foie gras liver health family 1 (InterPro:IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR